Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC136632.2-201ENST00000512891 861 ntBASIC17.09■□□□□ 0.33
TRIM39Q9HCM9 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.09■□□□□ 0.33
TRIM39Q9HCM9 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM39Q9HCM9 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.09■□□□□ 0.33
TRIM39Q9HCM9 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.09■□□□□ 0.33
TRIM39Q9HCM9 AL356488.2-201ENST00000602755 427 ntBASIC17.09■□□□□ 0.33
TRIM39Q9HCM9 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.09■□□□□ 0.33
TRIM39Q9HCM9 IL9RP2-201ENST00000423948 1312 ntBASIC17.09■□□□□ 0.33
TRIM39Q9HCM9 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM39Q9HCM9 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM39Q9HCM9 AP002414.3-201ENST00000589352 1468 ntBASIC17.09■□□□□ 0.33
TRIM39Q9HCM9 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.09■□□□□ 0.33
TRIM39Q9HCM9 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM39Q9HCM9 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM39Q9HCM9 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
TRIM39Q9HCM9 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.08■□□□□ 0.33
TRIM39Q9HCM9 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.08■□□□□ 0.33
TRIM39Q9HCM9 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRIM39Q9HCM9 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.08■□□□□ 0.33
TRIM39Q9HCM9 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.08■□□□□ 0.33
TRIM39Q9HCM9 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRIM39Q9HCM9 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRIM39Q9HCM9 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 AC006504.4-201ENST00000592118 1568 ntBASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 GPR89P-201ENST00000407924 1495 ntBASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM39Q9HCM9 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 IGHV3-22-201ENST00000520721 359 ntBASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM39Q9HCM9 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 AL590787.1-201ENST00000568856 1315 ntBASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 ELK2BP-201ENST00000415014 1224 ntBASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 AC098831.1-202ENST00000438821 336 ntBASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms