Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 AC023824.1-201ENST00000562945 2975 ntBASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 MMP23A-201ENST00000234610 1017 ntBASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 AC109462.3-201ENST00000573934 613 ntBASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 AL138966.2-201ENST00000621997 464 ntBASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28BQ9BUN5 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 SAPCD2P2-201ENST00000431719 1174 ntBASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 AP003733.1-201ENST00000491725 852 ntBASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 DENND3-207ENST00000518347 850 ntTSL 2 BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 CLN6-221ENST00000637494 765 ntTSL 5 BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28BQ9BUN5 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC28BQ9BUN5 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC28BQ9BUN5 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC28BQ9BUN5 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC28BQ9BUN5 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC28BQ9BUN5 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC28BQ9BUN5 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC28BQ9BUN5 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.77■□□□□ 0.27
CCDC28BQ9BUN5 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.77■□□□□ 0.27
CCDC28BQ9BUN5 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.77■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms