Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SYNGAP1Q96PV0 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SYNGAP1Q96PV0 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
SYNGAP1Q96PV0 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC19.51■□□□□ 0.71
SYNGAP1Q96PV0 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC19.51■□□□□ 0.71
SYNGAP1Q96PV0 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC19.51■□□□□ 0.71
SYNGAP1Q96PV0 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SYNGAP1Q96PV0 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC19.51■□□□□ 0.71
SYNGAP1Q96PV0 SYS1-203ENST00000414310 795 ntTSL 3 BASIC19.51■□□□□ 0.71
SYNGAP1Q96PV0 AC112191.1-201ENST00000523689 701 ntBASIC19.51■□□□□ 0.71
SYNGAP1Q96PV0 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC19.51■□□□□ 0.71
SYNGAP1Q96PV0 AC022145.2-201ENST00000598203 171 ntBASIC19.51■□□□□ 0.71
SYNGAP1Q96PV0 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC19.51■□□□□ 0.71
SYNGAP1Q96PV0 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC19.51■□□□□ 0.71
SYNGAP1Q96PV0 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
SYNGAP1Q96PV0 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 AC012317.2-201ENST00000623305 2251 ntBASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 AC129492.6-201ENST00000611383 1305 ntBASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 LINC00304-203ENST00000565008 1864 ntBASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 AC067852.2-201ENST00000590513 2313 ntBASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 FALEC-201ENST00000416894 566 ntTSL 3 BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 ADH5P3-201ENST00000433842 1137 ntBASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 SLC25A6P5-201ENST00000435663 894 ntBASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 LINC01451-201ENST00000623792 534 ntBASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC19.5■□□□□ 0.71
SYNGAP1Q96PV0 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 AC092919.2-201ENST00000623631 1645 ntBASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 CD276-203ENST00000537340 2439 ntTSL 2 BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 FAM8A3P-201ENST00000427218 844 ntBASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 AC087163.2-201ENST00000457299 853 ntBASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 SLC25A6P2-201ENST00000497974 877 ntBASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 LSM12-202ENST00000585388 942 ntTSL 3 BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 AC011467.4-201ENST00000594891 528 ntBASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC19.49■□□□□ 0.71
SYNGAP1Q96PV0 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNGAP1Q96PV0 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SYNGAP1Q96PV0 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
SYNGAP1Q96PV0 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNGAP1Q96PV0 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC19.48■□□□□ 0.71
SYNGAP1Q96PV0 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC19.48■□□□□ 0.71
SYNGAP1Q96PV0 NME9-203ENST00000383180 2133 ntTSL 2 BASIC19.48■□□□□ 0.71
SYNGAP1Q96PV0 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SYNGAP1Q96PV0 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNGAP1Q96PV0 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SYNGAP1Q96PV0 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC19.48■□□□□ 0.71
SYNGAP1Q96PV0 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNGAP1Q96PV0 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
SYNGAP1Q96PV0 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SYNGAP1Q96PV0 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms