Protein–RNA interactions for Protein: Q8TER0

SNED1, Sushi, nidogen and EGF-like domain-containing protein 1, humanhuman

Predictions only

Length 1,413 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1Q8TER0 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC20.74■□□□□ 0.91
SNED1Q8TER0 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SNED1Q8TER0 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SNED1Q8TER0 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
SNED1Q8TER0 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SNED1Q8TER0 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SNED1Q8TER0 LYSMD4-203ENST00000378904 2122 ntBASIC20.73■□□□□ 0.91
SNED1Q8TER0 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
SNED1Q8TER0 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SNED1Q8TER0 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SNED1Q8TER0 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
SNED1Q8TER0 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SNED1Q8TER0 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC20.73■□□□□ 0.91
SNED1Q8TER0 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC20.73■□□□□ 0.91
SNED1Q8TER0 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC20.73■□□□□ 0.91
SNED1Q8TER0 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC20.73■□□□□ 0.91
SNED1Q8TER0 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC20.73■□□□□ 0.91
SNED1Q8TER0 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC20.73■□□□□ 0.91
SNED1Q8TER0 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC20.73■□□□□ 0.91
SNED1Q8TER0 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SNED1Q8TER0 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SNED1Q8TER0 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SNED1Q8TER0 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SNED1Q8TER0 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC20.73■□□□□ 0.91
SNED1Q8TER0 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
SNED1Q8TER0 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC20.73■□□□□ 0.91
SNED1Q8TER0 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC20.72■□□□□ 0.91
SNED1Q8TER0 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
SNED1Q8TER0 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC20.72■□□□□ 0.91
SNED1Q8TER0 HCG4-201ENST00000418983 998 ntBASIC20.72■□□□□ 0.91
SNED1Q8TER0 NME2P1-201ENST00000426182 414 ntBASIC20.72■□□□□ 0.91
SNED1Q8TER0 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC20.72■□□□□ 0.91
SNED1Q8TER0 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.72■□□□□ 0.91
SNED1Q8TER0 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC20.72■□□□□ 0.91
SNED1Q8TER0 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
SNED1Q8TER0 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
SNED1Q8TER0 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
SNED1Q8TER0 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SNED1Q8TER0 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SNED1Q8TER0 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SNED1Q8TER0 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC20.72■□□□□ 0.91
SNED1Q8TER0 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC20.72■□□□□ 0.91
SNED1Q8TER0 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SNED1Q8TER0 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC20.71■□□□□ 0.91
SNED1Q8TER0 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC20.71■□□□□ 0.91
SNED1Q8TER0 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC20.71■□□□□ 0.91
SNED1Q8TER0 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC20.71■□□□□ 0.91
SNED1Q8TER0 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC20.71■□□□□ 0.91
SNED1Q8TER0 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC20.71■□□□□ 0.91
SNED1Q8TER0 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
SNED1Q8TER0 RN7SL692P-201ENST00000464677 288 ntBASIC20.71■□□□□ 0.91
SNED1Q8TER0 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SNED1Q8TER0 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC20.71■□□□□ 0.91
SNED1Q8TER0 NOP2-220ENST00000545915 630 ntTSL 2 BASIC20.71■□□□□ 0.91
SNED1Q8TER0 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
SNED1Q8TER0 MIR4453-201ENST00000584019 89 ntBASIC20.71■□□□□ 0.91
SNED1Q8TER0 AL590560.3-201ENST00000623350 461 ntBASIC20.71■□□□□ 0.91
SNED1Q8TER0 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC20.71■□□□□ 0.91
SNED1Q8TER0 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SNED1Q8TER0 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC20.71■□□□□ 0.91
SNED1Q8TER0 AC016027.1-202ENST00000607927 1699 ntBASIC20.71■□□□□ 0.91
SNED1Q8TER0 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
SNED1Q8TER0 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.71■□□□□ 0.91
SNED1Q8TER0 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SNED1Q8TER0 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SNED1Q8TER0 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.71■□□□□ 0.91
SNED1Q8TER0 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
SNED1Q8TER0 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
SNED1Q8TER0 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
SNED1Q8TER0 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.91
SNED1Q8TER0 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SNED1Q8TER0 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SNED1Q8TER0 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SNED1Q8TER0 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SNED1Q8TER0 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC20.7■□□□□ 0.9
SNED1Q8TER0 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC20.7■□□□□ 0.9
SNED1Q8TER0 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SNED1Q8TER0 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC20.7■□□□□ 0.9
SNED1Q8TER0 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC20.7■□□□□ 0.9
SNED1Q8TER0 NKG7-205ENST00000600427 520 ntTSL 3 BASIC20.7■□□□□ 0.9
SNED1Q8TER0 AC073592.8-201ENST00000624126 511 ntBASIC20.7■□□□□ 0.9
SNED1Q8TER0 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SNED1Q8TER0 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC20.7■□□□□ 0.9
SNED1Q8TER0 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SNED1Q8TER0 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SNED1Q8TER0 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC20.7■□□□□ 0.9
SNED1Q8TER0 FOXO1B-201ENST00000504678 1527 ntBASIC20.7■□□□□ 0.9
SNED1Q8TER0 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC20.7■□□□□ 0.9
SNED1Q8TER0 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.7■□□□□ 0.9
SNED1Q8TER0 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC20.7■□□□□ 0.9
SNED1Q8TER0 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC20.7■□□□□ 0.9
SNED1Q8TER0 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
SNED1Q8TER0 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC20.7■□□□□ 0.9
SNED1Q8TER0 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SNED1Q8TER0 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SNED1Q8TER0 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SNED1Q8TER0 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
SNED1Q8TER0 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SNED1Q8TER0 SLC25A1P3-201ENST00000395415 828 ntBASIC20.7■□□□□ 0.9
SNED1Q8TER0 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms