Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.28
NPHP3Q7Z494 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC23.08■■□□□ 1.28
NPHP3Q7Z494 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC23.08■■□□□ 1.28
NPHP3Q7Z494 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC23.08■■□□□ 1.28
NPHP3Q7Z494 AL353779.1-201ENST00000434793 351 ntBASIC23.08■■□□□ 1.28
NPHP3Q7Z494 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC23.08■■□□□ 1.28
NPHP3Q7Z494 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
NPHP3Q7Z494 STOM-203ENST00000538954 1257 ntTSL 5 BASIC23.08■■□□□ 1.28
NPHP3Q7Z494 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC23.08■■□□□ 1.28
NPHP3Q7Z494 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC23.08■■□□□ 1.28
NPHP3Q7Z494 IGHV3-72-202ENST00000621503 303 ntBASIC23.08■■□□□ 1.28
NPHP3Q7Z494 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC23.07■■□□□ 1.28
NPHP3Q7Z494 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
NPHP3Q7Z494 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP3Q7Z494 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP3Q7Z494 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP3Q7Z494 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP3Q7Z494 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP3Q7Z494 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP3Q7Z494 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC23.07■■□□□ 1.28
NPHP3Q7Z494 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP3Q7Z494 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP3Q7Z494 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC23.07■■□□□ 1.28
NPHP3Q7Z494 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
NPHP3Q7Z494 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC23.07■■□□□ 1.28
NPHP3Q7Z494 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC23.07■■□□□ 1.28
NPHP3Q7Z494 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP3Q7Z494 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP3Q7Z494 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC23.07■■□□□ 1.28
NPHP3Q7Z494 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC23.07■■□□□ 1.28
NPHP3Q7Z494 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC23.07■■□□□ 1.28
NPHP3Q7Z494 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC23.07■■□□□ 1.28
NPHP3Q7Z494 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC23.07■■□□□ 1.28
NPHP3Q7Z494 AC073389.1-201ENST00000595595 795 ntBASIC23.07■■□□□ 1.28
NPHP3Q7Z494 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
NPHP3Q7Z494 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC23.07■■□□□ 1.28
NPHP3Q7Z494 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC23.06■■□□□ 1.28
NPHP3Q7Z494 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP3Q7Z494 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP3Q7Z494 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC23.06■■□□□ 1.28
NPHP3Q7Z494 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
NPHP3Q7Z494 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
NPHP3Q7Z494 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC23.06■■□□□ 1.28
NPHP3Q7Z494 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
NPHP3Q7Z494 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
NPHP3Q7Z494 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP3Q7Z494 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP3Q7Z494 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC23.06■■□□□ 1.28
NPHP3Q7Z494 AC007541.1-201ENST00000570282 1469 ntBASIC23.06■■□□□ 1.28
NPHP3Q7Z494 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC23.06■■□□□ 1.28
NPHP3Q7Z494 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP3Q7Z494 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP3Q7Z494 AC087499.5-201ENST00000452760 1342 ntBASIC23.06■■□□□ 1.28
NPHP3Q7Z494 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC23.06■■□□□ 1.28
NPHP3Q7Z494 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC23.06■■□□□ 1.28
NPHP3Q7Z494 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC23.06■■□□□ 1.28
NPHP3Q7Z494 AC017083.2-201ENST00000608069 979 ntBASIC23.06■■□□□ 1.28
NPHP3Q7Z494 AL844908.2-201ENST00000609461 460 ntBASIC23.06■■□□□ 1.28
NPHP3Q7Z494 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP3Q7Z494 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
NPHP3Q7Z494 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP3Q7Z494 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC23.05■■□□□ 1.28
NPHP3Q7Z494 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
NPHP3Q7Z494 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
NPHP3Q7Z494 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC23.05■■□□□ 1.28
NPHP3Q7Z494 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC23.05■■□□□ 1.28
NPHP3Q7Z494 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
NPHP3Q7Z494 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
NPHP3Q7Z494 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC23.05■■□□□ 1.28
NPHP3Q7Z494 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
NPHP3Q7Z494 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC23.05■■□□□ 1.28
NPHP3Q7Z494 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC23.05■■□□□ 1.28
NPHP3Q7Z494 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC23.05■■□□□ 1.28
NPHP3Q7Z494 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC23.05■■□□□ 1.28
NPHP3Q7Z494 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC23.05■■□□□ 1.28
NPHP3Q7Z494 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC23.05■■□□□ 1.28
NPHP3Q7Z494 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC23.05■■□□□ 1.28
NPHP3Q7Z494 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC23.05■■□□□ 1.28
NPHP3Q7Z494 PRR29-204ENST00000577953 565 ntTSL 4 BASIC23.05■■□□□ 1.28
NPHP3Q7Z494 TEX28P1-201ENST00000613479 1221 ntBASIC23.05■■□□□ 1.28
NPHP3Q7Z494 TEX28P2-201ENST00000617764 1221 ntBASIC23.05■■□□□ 1.28
NPHP3Q7Z494 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
NPHP3Q7Z494 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP3Q7Z494 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC23.04■■□□□ 1.28
NPHP3Q7Z494 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC23.04■■□□□ 1.28
NPHP3Q7Z494 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC23.04■■□□□ 1.28
NPHP3Q7Z494 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
NPHP3Q7Z494 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP3Q7Z494 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC23.04■■□□□ 1.28
NPHP3Q7Z494 AL035456.1-201ENST00000456064 1369 ntBASIC23.04■■□□□ 1.28
NPHP3Q7Z494 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP3Q7Z494 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP3Q7Z494 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
NPHP3Q7Z494 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP3Q7Z494 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC23.04■■□□□ 1.28
NPHP3Q7Z494 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC23.04■■□□□ 1.28
NPHP3Q7Z494 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC23.04■■□□□ 1.28
NPHP3Q7Z494 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP3Q7Z494 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP3Q7Z494 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC23.04■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms