Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 AL031284.1-201ENST00000419297 478 ntBASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 AL590627.1-203ENST00000421194 1026 ntBASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 AC148477.5-201ENST00000625164 1645 ntBASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 PCDHA12-202ENST00000613593 2588 ntBASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 RNPS1P1-201ENST00000507437 918 ntBASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 AC073648.2-201ENST00000510116 352 ntBASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 RNA5SP419-201ENST00000515908 135 ntBASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 AP005117.1-201ENST00000584346 1413 ntBASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 LINC02012-201ENST00000608206 1725 ntBASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.84■□□□□ 0.29
PTCHD3Q3KNS1 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
PTCHD3Q3KNS1 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
PTCHD3Q3KNS1 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
PTCHD3Q3KNS1 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.29
PTCHD3Q3KNS1 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
PTCHD3Q3KNS1 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms