Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
CLRN1P58418 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 SOD2-201ENST00000337404 991 ntTSL 2 BASIC15.41■□□□□ 0.06
CLRN1P58418 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 AL020989.1-201ENST00000422979 469 ntBASIC15.41■□□□□ 0.06
CLRN1P58418 ABCD1P5-201ENST00000445663 754 ntBASIC15.41■□□□□ 0.06
CLRN1P58418 SIGLEC30P-201ENST00000455569 941 ntBASIC15.41■□□□□ 0.06
CLRN1P58418 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC15.41■□□□□ 0.06
CLRN1P58418 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC15.41■□□□□ 0.06
CLRN1P58418 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CLRN1P58418 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC15.41■□□□□ 0.06
CLRN1P58418 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
CLRN1P58418 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
CLRN1P58418 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 PRORSD1P-202ENST00000563365 2154 ntBASIC15.41■□□□□ 0.06
CLRN1P58418 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC15.41■□□□□ 0.06
CLRN1P58418 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC15.4■□□□□ 0.06
CLRN1P58418 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC15.4■□□□□ 0.06
CLRN1P58418 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
CLRN1P58418 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC15.4■□□□□ 0.06
CLRN1P58418 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC15.4■□□□□ 0.06
CLRN1P58418 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC15.4■□□□□ 0.06
CLRN1P58418 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC15.4■□□□□ 0.06
CLRN1P58418 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC15.4■□□□□ 0.06
CLRN1P58418 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 AP000867.4-201ENST00000641616 219 ntBASIC15.4■□□□□ 0.06
CLRN1P58418 RHBDF1P1-201ENST00000427504 1941 ntBASIC15.4■□□□□ 0.06
CLRN1P58418 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
CLRN1P58418 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC15.4■□□□□ 0.06
CLRN1P58418 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
CLRN1P58418 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC15.4■□□□□ 0.06
CLRN1P58418 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC15.4■□□□□ 0.06
CLRN1P58418 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC15.4■□□□□ 0.06
CLRN1P58418 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC15.4■□□□□ 0.06
CLRN1P58418 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC15.4■□□□□ 0.06
CLRN1P58418 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN1P58418 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
CLRN1P58418 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC15.39■□□□□ 0.05
CLRN1P58418 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC15.39■□□□□ 0.05
CLRN1P58418 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC15.39■□□□□ 0.05
CLRN1P58418 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN1P58418 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN1P58418 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN1P58418 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
CLRN1P58418 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC15.39■□□□□ 0.05
CLRN1P58418 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN1P58418 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN1P58418 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN1P58418 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
CLRN1P58418 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN1P58418 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN1P58418 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN1P58418 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC15.39■□□□□ 0.05
CLRN1P58418 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC15.39■□□□□ 0.05
CLRN1P58418 NUS1P1-201ENST00000446295 882 ntBASIC15.39■□□□□ 0.05
CLRN1P58418 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN1P58418 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms