Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
MSH6P52701 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
MSH6P52701 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC23.56■■□□□ 1.36
MSH6P52701 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
MSH6P52701 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
MSH6P52701 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC23.56■■□□□ 1.36
MSH6P52701 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC23.56■■□□□ 1.36
MSH6P52701 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
MSH6P52701 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC23.55■■□□□ 1.36
MSH6P52701 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
MSH6P52701 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
MSH6P52701 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC23.55■■□□□ 1.36
MSH6P52701 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC23.55■■□□□ 1.36
MSH6P52701 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC23.55■■□□□ 1.36
MSH6P52701 AC022210.1-201ENST00000449856 793 ntBASIC23.55■■□□□ 1.36
MSH6P52701 AC011495.1-201ENST00000498085 584 ntBASIC23.55■■□□□ 1.36
MSH6P52701 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC23.55■■□□□ 1.36
MSH6P52701 WASH4P-201ENST00000564273 1246 ntBASIC23.55■■□□□ 1.36
MSH6P52701 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC23.55■■□□□ 1.36
MSH6P52701 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC23.55■■□□□ 1.36
MSH6P52701 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC23.55■■□□□ 1.36
MSH6P52701 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
MSH6P52701 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
MSH6P52701 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC23.55■■□□□ 1.36
MSH6P52701 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
MSH6P52701 AL020996.1-203ENST00000536896 2307 ntBASIC23.55■■□□□ 1.36
MSH6P52701 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC23.55■■□□□ 1.36
MSH6P52701 AP3S2-216ENST00000617003 1561 ntBASIC23.55■■□□□ 1.36
MSH6P52701 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
MSH6P52701 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
MSH6P52701 NARF-206ENST00000457415 1668 ntTSL 5 BASIC23.55■■□□□ 1.36
MSH6P52701 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
MSH6P52701 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
MSH6P52701 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
MSH6P52701 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
MSH6P52701 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
MSH6P52701 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC23.54■■□□□ 1.36
MSH6P52701 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC23.54■■□□□ 1.36
MSH6P52701 AL138918.1-201ENST00000568306 659 ntBASIC23.54■■□□□ 1.36
MSH6P52701 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
MSH6P52701 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC23.54■■□□□ 1.36
MSH6P52701 AL033527.4-201ENST00000641026 673 ntBASIC23.54■■□□□ 1.36
MSH6P52701 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
MSH6P52701 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
MSH6P52701 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC23.54■■□□□ 1.36
MSH6P52701 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
MSH6P52701 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
MSH6P52701 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC23.54■■□□□ 1.36
MSH6P52701 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC23.54■■□□□ 1.36
MSH6P52701 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
MSH6P52701 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC23.54■■□□□ 1.36
MSH6P52701 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
MSH6P52701 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
MSH6P52701 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC23.54■■□□□ 1.36
MSH6P52701 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC23.54■■□□□ 1.36
MSH6P52701 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
MSH6P52701 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC23.54■■□□□ 1.36
MSH6P52701 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
MSH6P52701 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
MSH6P52701 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
MSH6P52701 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC23.53■■□□□ 1.36
MSH6P52701 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
MSH6P52701 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC23.53■■□□□ 1.36
MSH6P52701 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
MSH6P52701 AC105233.2-201ENST00000523697 349 ntBASIC23.53■■□□□ 1.36
MSH6P52701 AF228730.5-201ENST00000530288 346 ntBASIC23.53■■□□□ 1.36
MSH6P52701 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC23.53■■□□□ 1.36
MSH6P52701 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC23.53■■□□□ 1.36
MSH6P52701 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC23.53■■□□□ 1.36
MSH6P52701 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
MSH6P52701 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
MSH6P52701 AL391825.1-201ENST00000457671 1364 ntBASIC23.53■■□□□ 1.36
MSH6P52701 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC23.53■■□□□ 1.36
MSH6P52701 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
MSH6P52701 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
MSH6P52701 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC23.53■■□□□ 1.36
MSH6P52701 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
MSH6P52701 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC23.53■■□□□ 1.36
MSH6P52701 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
MSH6P52701 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
MSH6P52701 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
MSH6P52701 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
MSH6P52701 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
MSH6P52701 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
MSH6P52701 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC23.53■■□□□ 1.36
MSH6P52701 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
MSH6P52701 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
MSH6P52701 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
MSH6P52701 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
MSH6P52701 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC23.52■■□□□ 1.36
MSH6P52701 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC23.52■■□□□ 1.36
MSH6P52701 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC23.52■■□□□ 1.36
MSH6P52701 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
MSH6P52701 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC23.52■■□□□ 1.36
MSH6P52701 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC23.52■■□□□ 1.36
MSH6P52701 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
MSH6P52701 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC23.52■■□□□ 1.36
MSH6P52701 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
MSH6P52701 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC23.52■■□□□ 1.36
MSH6P52701 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC23.52■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms