Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD3P31249 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC13.34□□□□□ -0.27
HOXD3P31249 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD3P31249 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD3P31249 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD3P31249 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD3P31249 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
HOXD3P31249 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD3P31249 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD3P31249 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
HOXD3P31249 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD3P31249 PMP22-202ENST00000395936 816 ntTSL 3 BASIC13.34□□□□□ -0.27
HOXD3P31249 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
HOXD3P31249 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC13.34□□□□□ -0.27
HOXD3P31249 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC13.34□□□□□ -0.27
HOXD3P31249 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC13.34□□□□□ -0.27
HOXD3P31249 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD3P31249 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC13.34□□□□□ -0.27
HOXD3P31249 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD3P31249 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC13.34□□□□□ -0.27
HOXD3P31249 AC006557.2-201ENST00000592985 1240 ntBASIC13.34□□□□□ -0.27
HOXD3P31249 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC13.34□□□□□ -0.27
HOXD3P31249 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
HOXD3P31249 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC13.34□□□□□ -0.27
HOXD3P31249 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD3P31249 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD3P31249 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC13.34□□□□□ -0.27
HOXD3P31249 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
HOXD3P31249 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD3P31249 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD3P31249 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD3P31249 AC067852.2-201ENST00000590513 2313 ntBASIC13.34□□□□□ -0.27
HOXD3P31249 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD3P31249 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC13.34□□□□□ -0.27
HOXD3P31249 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
HOXD3P31249 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC13.33□□□□□ -0.27
HOXD3P31249 GID4-202ENST00000376345 1391 ntTSL 3 BASIC13.33□□□□□ -0.27
HOXD3P31249 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC13.33□□□□□ -0.28
HOXD3P31249 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC13.33□□□□□ -0.28
HOXD3P31249 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
HOXD3P31249 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
HOXD3P31249 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD3P31249 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
HOXD3P31249 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD3P31249 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
HOXD3P31249 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD3P31249 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
HOXD3P31249 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD3P31249 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD3P31249 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD3P31249 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD3P31249 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD3P31249 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
HOXD3P31249 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD3P31249 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC13.33□□□□□ -0.28
HOXD3P31249 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD3P31249 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD3P31249 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC13.33□□□□□ -0.28
HOXD3P31249 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC13.33□□□□□ -0.28
HOXD3P31249 AC108751.1-201ENST00000490852 363 ntBASIC13.33□□□□□ -0.28
HOXD3P31249 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC13.33□□□□□ -0.28
HOXD3P31249 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC13.33□□□□□ -0.28
HOXD3P31249 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC13.33□□□□□ -0.28
HOXD3P31249 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD3P31249 AC064836.3-201ENST00000607928 673 ntBASIC13.33□□□□□ -0.28
HOXD3P31249 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD3P31249 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD3P31249 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD3P31249 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
HOXD3P31249 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD3P31249 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC13.33□□□□□ -0.28
HOXD3P31249 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD3P31249 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD3P31249 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD3P31249 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC13.32□□□□□ -0.28
HOXD3P31249 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD3P31249 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD3P31249 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD3P31249 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD3P31249 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD3P31249 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC13.32□□□□□ -0.28
HOXD3P31249 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD3P31249 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD3P31249 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD3P31249 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
HOXD3P31249 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD3P31249 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC13.32□□□□□ -0.28
HOXD3P31249 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC13.32□□□□□ -0.28
HOXD3P31249 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
HOXD3P31249 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD3P31249 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC13.32□□□□□ -0.28
HOXD3P31249 SLC4A1APP2-201ENST00000424054 1259 ntBASIC13.32□□□□□ -0.28
HOXD3P31249 HMGN1P19-201ENST00000436976 333 ntBASIC13.32□□□□□ -0.28
HOXD3P31249 URGCP-206ENST00000446958 365 ntTSL 2 BASIC13.32□□□□□ -0.28
HOXD3P31249 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC13.32□□□□□ -0.28
HOXD3P31249 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC13.32□□□□□ -0.28
HOXD3P31249 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC13.32□□□□□ -0.28
HOXD3P31249 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC13.32□□□□□ -0.28
HOXD3P31249 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC13.32□□□□□ -0.28
HOXD3P31249 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms