Protein–RNA interactions for Protein: P20036

HLA-DPA1, HLA class II histocompatibility antigen, DP alpha 1 chain, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1P20036 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.4■□□□□ 0.38
HLA-DPA1P20036 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DPA1P20036 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DPA1P20036 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.4■□□□□ 0.38
HLA-DPA1P20036 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DPA1P20036 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DPA1P20036 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DPA1P20036 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.4■□□□□ 0.38
HLA-DPA1P20036 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.4■□□□□ 0.38
HLA-DPA1P20036 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DPA1P20036 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DPA1P20036 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.39■□□□□ 0.38
HLA-DPA1P20036 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
HLA-DPA1P20036 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 LINC00982-205ENST00000420957 435 ntBASIC17.39■□□□□ 0.37
HLA-DPA1P20036 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 AC124947.2-201ENST00000547118 1133 ntBASIC17.39■□□□□ 0.37
HLA-DPA1P20036 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 AL691432.3-201ENST00000621860 400 ntBASIC17.39■□□□□ 0.37
HLA-DPA1P20036 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DPA1P20036 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 NCF1C-201ENST00000438382 1427 ntBASIC17.38■□□□□ 0.37
HLA-DPA1P20036 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 AF238378.1-201ENST00000526806 358 ntBASIC17.38■□□□□ 0.37
HLA-DPA1P20036 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 OR6D1P-203ENST00000641209 4860 ntBASIC17.38■□□□□ 0.37
HLA-DPA1P20036 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DPA1P20036 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DPA1P20036 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DPA1P20036 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DPA1P20036 GPR89P-201ENST00000407924 1495 ntBASIC17.37■□□□□ 0.37
HLA-DPA1P20036 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DPA1P20036 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DPA1P20036 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.37■□□□□ 0.37
HLA-DPA1P20036 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DPA1P20036 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DPA1P20036 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.37■□□□□ 0.37
HLA-DPA1P20036 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.37■□□□□ 0.37
HLA-DPA1P20036 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DPA1P20036 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DPA1P20036 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
HLA-DPA1P20036 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.37■□□□□ 0.37
HLA-DPA1P20036 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC17.37■□□□□ 0.37
HLA-DPA1P20036 SART3-203ENST00000546611 1184 ntBASIC17.37■□□□□ 0.37
HLA-DPA1P20036 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.37■□□□□ 0.37
HLA-DPA1P20036 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DPA1P20036 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms