Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
SDC1P18827 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.41■□□□□ 0.22
SDC1P18827 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
SDC1P18827 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
SDC1P18827 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.41■□□□□ 0.22
SDC1P18827 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
SDC1P18827 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SDC1P18827 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
SDC1P18827 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
SDC1P18827 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDC1P18827 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDC1P18827 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.4■□□□□ 0.22
SDC1P18827 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.4■□□□□ 0.22
SDC1P18827 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.4■□□□□ 0.22
SDC1P18827 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDC1P18827 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDC1P18827 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDC1P18827 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.4■□□□□ 0.22
SDC1P18827 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SDC1P18827 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.4■□□□□ 0.22
SDC1P18827 AC092171.3-201ENST00000610122 2651 ntBASIC16.4■□□□□ 0.22
SDC1P18827 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
SDC1P18827 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
SDC1P18827 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.4■□□□□ 0.22
SDC1P18827 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDC1P18827 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.4■□□□□ 0.22
SDC1P18827 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
SDC1P18827 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SDC1P18827 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.4■□□□□ 0.22
SDC1P18827 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
SDC1P18827 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.4■□□□□ 0.22
SDC1P18827 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDC1P18827 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SDC1P18827 NUS1P1-201ENST00000446295 882 ntBASIC16.4■□□□□ 0.22
SDC1P18827 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.4■□□□□ 0.22
SDC1P18827 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.4■□□□□ 0.22
SDC1P18827 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SDC1P18827 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.4■□□□□ 0.22
SDC1P18827 NPAP1P7-201ENST00000613027 823 ntBASIC16.4■□□□□ 0.22
SDC1P18827 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.4■□□□□ 0.22
SDC1P18827 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.4■□□□□ 0.22
SDC1P18827 AP000867.4-201ENST00000641616 219 ntBASIC16.4■□□□□ 0.22
SDC1P18827 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDC1P18827 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SDC1P18827 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDC1P18827 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
SDC1P18827 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.4■□□□□ 0.22
SDC1P18827 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDC1P18827 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDC1P18827 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
SDC1P18827 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.4■□□□□ 0.22
SDC1P18827 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SDC1P18827 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.4■□□□□ 0.22
SDC1P18827 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDC1P18827 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.4■□□□□ 0.22
SDC1P18827 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
SDC1P18827 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.39■□□□□ 0.22
SDC1P18827 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SDC1P18827 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.39■□□□□ 0.21
SDC1P18827 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDC1P18827 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SDC1P18827 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
SDC1P18827 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDC1P18827 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDC1P18827 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SDC1P18827 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.39■□□□□ 0.21
SDC1P18827 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDC1P18827 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
SDC1P18827 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDC1P18827 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDC1P18827 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SDC1P18827 AL020989.1-201ENST00000422979 469 ntBASIC16.39■□□□□ 0.21
SDC1P18827 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDC1P18827 AC104819.1-201ENST00000504587 486 ntBASIC16.39■□□□□ 0.21
SDC1P18827 AP000867.3-201ENST00000524675 377 ntBASIC16.39■□□□□ 0.21
SDC1P18827 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDC1P18827 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.39■□□□□ 0.21
SDC1P18827 AC092329.2-201ENST00000598402 547 ntBASIC16.39■□□□□ 0.21
SDC1P18827 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.39■□□□□ 0.21
SDC1P18827 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.39■□□□□ 0.21
SDC1P18827 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SDC1P18827 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.39■□□□□ 0.21
SDC1P18827 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.39■□□□□ 0.21
SDC1P18827 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.39■□□□□ 0.21
SDC1P18827 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.39■□□□□ 0.21
SDC1P18827 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SDC1P18827 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SDC1P18827 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.39■□□□□ 0.21
SDC1P18827 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.39■□□□□ 0.21
SDC1P18827 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SDC1P18827 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SDC1P18827 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
SDC1P18827 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SDC1P18827 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
SDC1P18827 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SDC1P18827 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SDC1P18827 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
SDC1P18827 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.38■□□□□ 0.21
SDC1P18827 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SDC1P18827 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms