Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC19.9■□□□□ 0.78
CTDNEP1O95476 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC19.9■□□□□ 0.78
CTDNEP1O95476 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTDNEP1O95476 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CTDNEP1O95476 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.78
CTDNEP1O95476 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
CTDNEP1O95476 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CTDNEP1O95476 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CTDNEP1O95476 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CTDNEP1O95476 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CTDNEP1O95476 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CTDNEP1O95476 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC19.89■□□□□ 0.77
CTDNEP1O95476 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CTDNEP1O95476 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
CTDNEP1O95476 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
CTDNEP1O95476 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CTDNEP1O95476 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC19.89■□□□□ 0.77
CTDNEP1O95476 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CTDNEP1O95476 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CTDNEP1O95476 AC243591.1-201ENST00000452967 1364 ntBASIC19.89■□□□□ 0.77
CTDNEP1O95476 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC19.89■□□□□ 0.77
CTDNEP1O95476 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CTDNEP1O95476 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC19.89■□□□□ 0.77
CTDNEP1O95476 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
CTDNEP1O95476 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
CTDNEP1O95476 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CTDNEP1O95476 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC19.89■□□□□ 0.77
CTDNEP1O95476 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19.89■□□□□ 0.77
CTDNEP1O95476 AL139424.1-201ENST00000607572 797 ntBASIC19.89■□□□□ 0.77
CTDNEP1O95476 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
CTDNEP1O95476 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC19.89■□□□□ 0.77
CTDNEP1O95476 AL589182.2-201ENST00000619332 1049 ntBASIC19.89■□□□□ 0.77
CTDNEP1O95476 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
CTDNEP1O95476 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC19.89■□□□□ 0.77
CTDNEP1O95476 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC19.89■□□□□ 0.77
CTDNEP1O95476 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CTDNEP1O95476 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CTDNEP1O95476 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC19.88■□□□□ 0.77
CTDNEP1O95476 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CTDNEP1O95476 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CTDNEP1O95476 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CTDNEP1O95476 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CTDNEP1O95476 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CTDNEP1O95476 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
CTDNEP1O95476 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC19.88■□□□□ 0.77
CTDNEP1O95476 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CTDNEP1O95476 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC19.88■□□□□ 0.77
CTDNEP1O95476 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.88■□□□□ 0.77
CTDNEP1O95476 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC19.88■□□□□ 0.77
CTDNEP1O95476 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC19.88■□□□□ 0.77
CTDNEP1O95476 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CTDNEP1O95476 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC19.88■□□□□ 0.77
CTDNEP1O95476 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC19.88■□□□□ 0.77
CTDNEP1O95476 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CTDNEP1O95476 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
CTDNEP1O95476 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
CTDNEP1O95476 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CTDNEP1O95476 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CTDNEP1O95476 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CTDNEP1O95476 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
CTDNEP1O95476 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC19.87■□□□□ 0.77
CTDNEP1O95476 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CTDNEP1O95476 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CTDNEP1O95476 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
CTDNEP1O95476 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
CTDNEP1O95476 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC19.87■□□□□ 0.77
CTDNEP1O95476 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC19.87■□□□□ 0.77
CTDNEP1O95476 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC19.87■□□□□ 0.77
CTDNEP1O95476 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CTDNEP1O95476 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CTDNEP1O95476 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC19.87■□□□□ 0.77
CTDNEP1O95476 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CTDNEP1O95476 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC19.87■□□□□ 0.77
CTDNEP1O95476 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.87■□□□□ 0.77
CTDNEP1O95476 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC19.87■□□□□ 0.77
CTDNEP1O95476 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC19.87■□□□□ 0.77
CTDNEP1O95476 SDCCAG3P1-201ENST00000589292 1150 ntBASIC19.87■□□□□ 0.77
CTDNEP1O95476 TERC-201ENST00000602385 541 ntBASIC19.87■□□□□ 0.77
CTDNEP1O95476 AC004706.3-202ENST00000621574 984 ntBASIC19.87■□□□□ 0.77
CTDNEP1O95476 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CTDNEP1O95476 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CTDNEP1O95476 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CTDNEP1O95476 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
CTDNEP1O95476 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
CTDNEP1O95476 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CTDNEP1O95476 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CTDNEP1O95476 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC19.87■□□□□ 0.77
CTDNEP1O95476 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
CTDNEP1O95476 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CTDNEP1O95476 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CTDNEP1O95476 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CTDNEP1O95476 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
CTDNEP1O95476 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CTDNEP1O95476 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CTDNEP1O95476 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC19.86■□□□□ 0.77
CTDNEP1O95476 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CTDNEP1O95476 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC19.86■□□□□ 0.77
CTDNEP1O95476 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CTDNEP1O95476 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC19.86■□□□□ 0.77
CTDNEP1O95476 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms