Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC20.03■□□□□ 0.8
CDKL5O76039 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CDKL5O76039 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDKL5O76039 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CDKL5O76039 NCF1C-201ENST00000438382 1427 ntBASIC20.02■□□□□ 0.8
CDKL5O76039 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CDKL5O76039 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
CDKL5O76039 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CDKL5O76039 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDKL5O76039 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC20.02■□□□□ 0.8
CDKL5O76039 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC20.02■□□□□ 0.8
CDKL5O76039 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
CDKL5O76039 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CDKL5O76039 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDKL5O76039 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CDKL5O76039 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDKL5O76039 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDKL5O76039 SCARNA2-201ENST00000458748 420 ntBASIC20.02■□□□□ 0.8
CDKL5O76039 KRT18P56-201ENST00000507275 550 ntBASIC20.02■□□□□ 0.8
CDKL5O76039 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC20.02■□□□□ 0.8
CDKL5O76039 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
CDKL5O76039 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CDKL5O76039 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC20.02■□□□□ 0.8
CDKL5O76039 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC20.02■□□□□ 0.8
CDKL5O76039 TBCB-205ENST00000585746 875 ntTSL 3 BASIC20.02■□□□□ 0.8
CDKL5O76039 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC20.02■□□□□ 0.8
CDKL5O76039 PAN3-AS1-201ENST00000563843 1351 ntBASIC20.02■□□□□ 0.8
CDKL5O76039 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDKL5O76039 STX3-203ENST00000529177 1571 ntTSL 2 BASIC20.02■□□□□ 0.8
CDKL5O76039 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDKL5O76039 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
CDKL5O76039 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CDKL5O76039 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CDKL5O76039 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
CDKL5O76039 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CDKL5O76039 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CDKL5O76039 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC20.02■□□□□ 0.79
CDKL5O76039 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CDKL5O76039 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
CDKL5O76039 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDKL5O76039 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CDKL5O76039 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDKL5O76039 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDKL5O76039 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
CDKL5O76039 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
CDKL5O76039 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDKL5O76039 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CDKL5O76039 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CDKL5O76039 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CDKL5O76039 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CDKL5O76039 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC20.01■□□□□ 0.79
CDKL5O76039 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC20.01■□□□□ 0.79
CDKL5O76039 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CDKL5O76039 SAPCD2P3-201ENST00000455031 850 ntBASIC20.01■□□□□ 0.79
CDKL5O76039 FGFR3P6-201ENST00000457012 610 ntBASIC20.01■□□□□ 0.79
CDKL5O76039 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC20.01■□□□□ 0.79
CDKL5O76039 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC20.01■□□□□ 0.79
CDKL5O76039 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC20.01■□□□□ 0.79
CDKL5O76039 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
CDKL5O76039 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDKL5O76039 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CDKL5O76039 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CDKL5O76039 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDKL5O76039 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDKL5O76039 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CDKL5O76039 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDKL5O76039 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
CDKL5O76039 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC20.01■□□□□ 0.79
CDKL5O76039 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CDKL5O76039 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
CDKL5O76039 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CDKL5O76039 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDKL5O76039 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDKL5O76039 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC20■□□□□ 0.79
CDKL5O76039 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
CDKL5O76039 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CDKL5O76039 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
CDKL5O76039 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
CDKL5O76039 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
CDKL5O76039 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
CDKL5O76039 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CDKL5O76039 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC20■□□□□ 0.79
CDKL5O76039 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CDKL5O76039 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CDKL5O76039 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC20■□□□□ 0.79
CDKL5O76039 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC20■□□□□ 0.79
CDKL5O76039 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20■□□□□ 0.79
CDKL5O76039 IRF8-202ENST00000562492 946 ntTSL 3 BASIC20■□□□□ 0.79
CDKL5O76039 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC20■□□□□ 0.79
CDKL5O76039 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
CDKL5O76039 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CDKL5O76039 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CDKL5O76039 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
CDKL5O76039 FRMD8P1-201ENST00000440433 1524 ntBASIC20■□□□□ 0.79
CDKL5O76039 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC20■□□□□ 0.79
CDKL5O76039 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC20■□□□□ 0.79
CDKL5O76039 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC20■□□□□ 0.79
CDKL5O76039 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms