Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
NPHP4O75161 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC23.86■■□□□ 1.41
NPHP4O75161 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
NPHP4O75161 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
NPHP4O75161 FAM220BP-201ENST00000377689 816 ntBASIC23.86■■□□□ 1.41
NPHP4O75161 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
NPHP4O75161 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC23.86■■□□□ 1.41
NPHP4O75161 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
NPHP4O75161 AC133552.6-201ENST00000613406 534 ntBASIC23.86■■□□□ 1.41
NPHP4O75161 MIR6775-201ENST00000617557 69 ntBASIC23.86■■□□□ 1.41
NPHP4O75161 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC23.86■■□□□ 1.41
NPHP4O75161 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
NPHP4O75161 AC135776.1-201ENST00000319817 2481 ntBASIC23.86■■□□□ 1.41
NPHP4O75161 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC23.86■■□□□ 1.41
NPHP4O75161 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
NPHP4O75161 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
NPHP4O75161 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
NPHP4O75161 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
NPHP4O75161 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
NPHP4O75161 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC23.86■■□□□ 1.41
NPHP4O75161 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC23.86■■□□□ 1.41
NPHP4O75161 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
NPHP4O75161 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC23.86■■□□□ 1.41
NPHP4O75161 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
NPHP4O75161 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC23.85■■□□□ 1.41
NPHP4O75161 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
NPHP4O75161 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
NPHP4O75161 OSM-203ENST00000403463 464 ntTSL 3 BASIC23.85■■□□□ 1.41
NPHP4O75161 NME6-203ENST00000415644 849 ntTSL 2 BASIC23.85■■□□□ 1.41
NPHP4O75161 HIST1H2BPS3-201ENST00000419683 341 ntBASIC23.85■■□□□ 1.41
NPHP4O75161 BNIP3P42-201ENST00000454982 569 ntBASIC23.85■■□□□ 1.41
NPHP4O75161 CD81-207ENST00000481687 890 ntTSL 2 BASIC23.85■■□□□ 1.41
NPHP4O75161 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
NPHP4O75161 BNIP3P29-201ENST00000598302 571 ntBASIC23.85■■□□□ 1.41
NPHP4O75161 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
NPHP4O75161 AC011447.5-201ENST00000616168 564 ntBASIC23.85■■□□□ 1.41
NPHP4O75161 MIR6787-201ENST00000616675 61 ntBASIC23.85■■□□□ 1.41
NPHP4O75161 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
NPHP4O75161 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
NPHP4O75161 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC23.85■■□□□ 1.41
NPHP4O75161 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC23.85■■□□□ 1.41
NPHP4O75161 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
NPHP4O75161 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC23.85■■□□□ 1.41
NPHP4O75161 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
NPHP4O75161 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC23.85■■□□□ 1.41
NPHP4O75161 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
NPHP4O75161 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
NPHP4O75161 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
NPHP4O75161 ANKRD19P-201ENST00000338192 862 ntBASIC23.84■■□□□ 1.41
NPHP4O75161 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC23.84■■□□□ 1.41
NPHP4O75161 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
NPHP4O75161 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
NPHP4O75161 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
NPHP4O75161 AL512361.1-201ENST00000554200 418 ntBASIC23.84■■□□□ 1.41
NPHP4O75161 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC23.84■■□□□ 1.41
NPHP4O75161 AL079307.3-201ENST00000556114 283 ntBASIC23.84■■□□□ 1.41
NPHP4O75161 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC23.84■■□□□ 1.41
NPHP4O75161 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC23.84■■□□□ 1.41
NPHP4O75161 AL109936.8-201ENST00000641772 604 ntBASIC23.84■■□□□ 1.41
NPHP4O75161 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC23.84■■□□□ 1.41
NPHP4O75161 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC23.84■■□□□ 1.41
NPHP4O75161 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
NPHP4O75161 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
NPHP4O75161 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
NPHP4O75161 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC23.84■■□□□ 1.41
NPHP4O75161 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC23.84■■□□□ 1.41
NPHP4O75161 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
NPHP4O75161 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC23.84■■□□□ 1.41
NPHP4O75161 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
NPHP4O75161 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
NPHP4O75161 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC23.84■■□□□ 1.41
NPHP4O75161 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC23.84■■□□□ 1.41
NPHP4O75161 TOP3BP1-201ENST00000420768 1380 ntBASIC23.84■■□□□ 1.41
NPHP4O75161 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC23.84■■□□□ 1.41
NPHP4O75161 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
NPHP4O75161 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC23.84■■□□□ 1.41
NPHP4O75161 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC23.84■■□□□ 1.41
NPHP4O75161 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC23.84■■□□□ 1.41
NPHP4O75161 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC23.84■■□□□ 1.41
NPHP4O75161 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC23.84■■□□□ 1.41
NPHP4O75161 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
NPHP4O75161 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC23.83■■□□□ 1.41
NPHP4O75161 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
NPHP4O75161 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
NPHP4O75161 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC23.83■■□□□ 1.41
NPHP4O75161 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC23.83■■□□□ 1.41
NPHP4O75161 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC23.83■■□□□ 1.41
NPHP4O75161 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
NPHP4O75161 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC23.83■■□□□ 1.41
NPHP4O75161 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
NPHP4O75161 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
NPHP4O75161 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC23.83■■□□□ 1.4
NPHP4O75161 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC23.83■■□□□ 1.4
NPHP4O75161 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.4
NPHP4O75161 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.4
NPHP4O75161 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC23.83■■□□□ 1.4
NPHP4O75161 AC092933.1-201ENST00000393644 945 ntBASIC23.83■■□□□ 1.4
NPHP4O75161 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
NPHP4O75161 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC23.83■■□□□ 1.4
NPHP4O75161 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms