Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.25■□□□□ 0.35
SHOX2O60902 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
SHOX2O60902 AL031985.4-201ENST00000642138 673 ntBASIC17.25■□□□□ 0.35
SHOX2O60902 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SHOX2O60902 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHOX2O60902 PKD1P1-201ENST00000458669 6805 ntBASIC17.25■□□□□ 0.35
SHOX2O60902 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHOX2O60902 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.25■□□□□ 0.35
SHOX2O60902 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
SHOX2O60902 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
SHOX2O60902 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.25■□□□□ 0.35
SHOX2O60902 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SHOX2O60902 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHOX2O60902 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.25■□□□□ 0.35
SHOX2O60902 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.25■□□□□ 0.35
SHOX2O60902 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHOX2O60902 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHOX2O60902 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHOX2O60902 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC17.24■□□□□ 0.35
SHOX2O60902 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHOX2O60902 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC17.24■□□□□ 0.35
SHOX2O60902 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC17.24■□□□□ 0.35
SHOX2O60902 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHOX2O60902 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHOX2O60902 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC17.24■□□□□ 0.35
SHOX2O60902 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHOX2O60902 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHOX2O60902 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHOX2O60902 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHOX2O60902 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHOX2O60902 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHOX2O60902 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHOX2O60902 B3GAT3P1-201ENST00000471720 806 ntBASIC17.24■□□□□ 0.35
SHOX2O60902 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
SHOX2O60902 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHOX2O60902 EMC9-206ENST00000560403 872 ntTSL 2 BASIC17.24■□□□□ 0.35
SHOX2O60902 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
SHOX2O60902 AC110285.5-201ENST00000611501 352 ntBASIC17.24■□□□□ 0.35
SHOX2O60902 TBCB-214ENST00000629269 413 ntTSL 5 BASIC17.24■□□□□ 0.35
SHOX2O60902 FRMD8P1-201ENST00000440433 1524 ntBASIC17.24■□□□□ 0.35
SHOX2O60902 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHOX2O60902 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC17.24■□□□□ 0.35
SHOX2O60902 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHOX2O60902 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.24■□□□□ 0.35
SHOX2O60902 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHOX2O60902 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHOX2O60902 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SHOX2O60902 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC17.23■□□□□ 0.35
SHOX2O60902 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHOX2O60902 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHOX2O60902 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHOX2O60902 KRT16P1-201ENST00000399124 1418 ntBASIC17.23■□□□□ 0.35
SHOX2O60902 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SHOX2O60902 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHOX2O60902 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHOX2O60902 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHOX2O60902 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHOX2O60902 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHOX2O60902 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHOX2O60902 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHOX2O60902 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHOX2O60902 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHOX2O60902 ID1-201ENST00000376105 1233 ntBASIC17.23■□□□□ 0.35
SHOX2O60902 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.23■□□□□ 0.35
SHOX2O60902 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHOX2O60902 KRT18P29-201ENST00000397031 1267 ntBASIC17.23■□□□□ 0.35
SHOX2O60902 CA15P1-201ENST00000481698 905 ntBASIC17.23■□□□□ 0.35
SHOX2O60902 AP002982.1-201ENST00000492365 877 ntBASIC17.23■□□□□ 0.35
SHOX2O60902 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.23■□□□□ 0.35
SHOX2O60902 KRT18P6-201ENST00000555540 1265 ntBASIC17.23■□□□□ 0.35
SHOX2O60902 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.23■□□□□ 0.35
SHOX2O60902 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC17.23■□□□□ 0.35
SHOX2O60902 AC010240.3-201ENST00000607688 395 ntBASIC17.23■□□□□ 0.35
SHOX2O60902 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
SHOX2O60902 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHOX2O60902 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHOX2O60902 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHOX2O60902 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.23■□□□□ 0.35
SHOX2O60902 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHOX2O60902 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHOX2O60902 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC17.23■□□□□ 0.35
SHOX2O60902 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHOX2O60902 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHOX2O60902 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHOX2O60902 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHOX2O60902 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHOX2O60902 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
SHOX2O60902 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHOX2O60902 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SHOX2O60902 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHOX2O60902 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC17.22■□□□□ 0.35
SHOX2O60902 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC17.22■□□□□ 0.35
SHOX2O60902 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
SHOX2O60902 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHOX2O60902 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC17.22■□□□□ 0.35
SHOX2O60902 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
SHOX2O60902 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
SHOX2O60902 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHOX2O60902 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHOX2O60902 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms