Protein–RNA interactions for Protein: Q9Y6Z2

LINC01558, Uncharacterized protein encoded by LINC01558, humanhuman

Predictions only

Length 57 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01558Q9Y6Z2 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
LINC01558Q9Y6Z2 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LINC01558Q9Y6Z2 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC01558Q9Y6Z2 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC01558Q9Y6Z2 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
LINC01558Q9Y6Z2 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC12.69□□□□□ -0.38
LINC01558Q9Y6Z2 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
LINC01558Q9Y6Z2 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC01558Q9Y6Z2 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC12.69□□□□□ -0.38
LINC01558Q9Y6Z2 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
LINC01558Q9Y6Z2 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC01558Q9Y6Z2 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
LINC01558Q9Y6Z2 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC01558Q9Y6Z2 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC01558Q9Y6Z2 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC12.68□□□□□ -0.38
LINC01558Q9Y6Z2 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC01558Q9Y6Z2 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC12.68□□□□□ -0.38
LINC01558Q9Y6Z2 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC01558Q9Y6Z2 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC01558Q9Y6Z2 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
LINC01558Q9Y6Z2 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC12.68□□□□□ -0.38
LINC01558Q9Y6Z2 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01558Q9Y6Z2 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01558Q9Y6Z2 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC12.67□□□□□ -0.38
LINC01558Q9Y6Z2 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01558Q9Y6Z2 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
LINC01558Q9Y6Z2 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01558Q9Y6Z2 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
LINC01558Q9Y6Z2 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01558Q9Y6Z2 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01558Q9Y6Z2 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01558Q9Y6Z2 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC12.66□□□□□ -0.38
LINC01558Q9Y6Z2 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
LINC01558Q9Y6Z2 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC01558Q9Y6Z2 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
LINC01558Q9Y6Z2 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
LINC01558Q9Y6Z2 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC01558Q9Y6Z2 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
LINC01558Q9Y6Z2 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC01558Q9Y6Z2 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
LINC01558Q9Y6Z2 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC01558Q9Y6Z2 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC01558Q9Y6Z2 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC12.65□□□□□ -0.38
LINC01558Q9Y6Z2 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
LINC01558Q9Y6Z2 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
LINC01558Q9Y6Z2 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC01558Q9Y6Z2 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC01558Q9Y6Z2 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
LINC01558Q9Y6Z2 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
LINC01558Q9Y6Z2 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC01558Q9Y6Z2 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
LINC01558Q9Y6Z2 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC01558Q9Y6Z2 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC01558Q9Y6Z2 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC01558Q9Y6Z2 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC01558Q9Y6Z2 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
LINC01558Q9Y6Z2 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC01558Q9Y6Z2 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC01558Q9Y6Z2 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
LINC01558Q9Y6Z2 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
LINC01558Q9Y6Z2 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC01558Q9Y6Z2 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC01558Q9Y6Z2 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC01558Q9Y6Z2 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC01558Q9Y6Z2 AC138932.3-201ENST00000567634 1902 ntBASIC12.63□□□□□ -0.39
LINC01558Q9Y6Z2 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC12.63□□□□□ -0.39
LINC01558Q9Y6Z2 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
LINC01558Q9Y6Z2 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC01558Q9Y6Z2 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC12.63□□□□□ -0.39
LINC01558Q9Y6Z2 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
LINC01558Q9Y6Z2 ME2-208ENST00000638937 2471 ntTSL 5 BASIC12.63□□□□□ -0.39
LINC01558Q9Y6Z2 WHAMMP3-201ENST00000611636 1609 ntBASIC12.62□□□□□ -0.39
LINC01558Q9Y6Z2 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC01558Q9Y6Z2 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC01558Q9Y6Z2 AC137767.1-201ENST00000602918 1920 ntBASIC12.62□□□□□ -0.39
LINC01558Q9Y6Z2 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
LINC01558Q9Y6Z2 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC01558Q9Y6Z2 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC01558Q9Y6Z2 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC01558Q9Y6Z2 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC12.62□□□□□ -0.39
LINC01558Q9Y6Z2 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC12.62□□□□□ -0.39
LINC01558Q9Y6Z2 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LINC01558Q9Y6Z2 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC01558Q9Y6Z2 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC01558Q9Y6Z2 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC01558Q9Y6Z2 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
LINC01558Q9Y6Z2 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC12.62□□□□□ -0.39
LINC01558Q9Y6Z2 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC01558Q9Y6Z2 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC12.61□□□□□ -0.39
LINC01558Q9Y6Z2 STK25-234ENST00000535007 2459 ntTSL 2 BASIC12.61□□□□□ -0.39
LINC01558Q9Y6Z2 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC01558Q9Y6Z2 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC12.61□□□□□ -0.39
LINC01558Q9Y6Z2 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
LINC01558Q9Y6Z2 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC01558Q9Y6Z2 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC12.61□□□□□ -0.39
LINC01558Q9Y6Z2 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC01558Q9Y6Z2 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC01558Q9Y6Z2 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC12.6□□□□□ -0.39
LINC01558Q9Y6Z2 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
LINC01558Q9Y6Z2 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms