Protein–RNA interactions for Protein: Q9Y5I1

PCDHA11, Protocadherin alpha-11, humanhuman

Predictions only

Length 949 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11Q9Y5I1 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC26.55■■□□□ 1.84
PCDHA11Q9Y5I1 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC26.55■■□□□ 1.84
PCDHA11Q9Y5I1 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
PCDHA11Q9Y5I1 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC26.54■■□□□ 1.84
PCDHA11Q9Y5I1 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC26.54■■□□□ 1.84
PCDHA11Q9Y5I1 MIR4787-201ENST00000607364 84 ntBASIC26.54■■□□□ 1.84
PCDHA11Q9Y5I1 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
PCDHA11Q9Y5I1 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC26.53■■□□□ 1.84
PCDHA11Q9Y5I1 LONRF2P2-201ENST00000439212 571 ntBASIC26.53■■□□□ 1.84
PCDHA11Q9Y5I1 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
PCDHA11Q9Y5I1 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC26.52■■□□□ 1.84
PCDHA11Q9Y5I1 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC26.52■■□□□ 1.84
PCDHA11Q9Y5I1 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC26.52■■□□□ 1.84
PCDHA11Q9Y5I1 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC26.52■■□□□ 1.84
PCDHA11Q9Y5I1 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.84
PCDHA11Q9Y5I1 AL139393.2-201ENST00000608721 2025 ntBASIC26.51■■□□□ 1.83
PCDHA11Q9Y5I1 BX664725.1-201ENST00000438252 379 ntBASIC26.51■■□□□ 1.83
PCDHA11Q9Y5I1 RPS2P7-201ENST00000447334 885 ntBASIC26.51■■□□□ 1.83
PCDHA11Q9Y5I1 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC26.51■■□□□ 1.83
PCDHA11Q9Y5I1 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC26.51■■□□□ 1.83
PCDHA11Q9Y5I1 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC26.51■■□□□ 1.83
PCDHA11Q9Y5I1 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
PCDHA11Q9Y5I1 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
PCDHA11Q9Y5I1 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC26.5■■□□□ 1.83
PCDHA11Q9Y5I1 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC26.5■■□□□ 1.83
PCDHA11Q9Y5I1 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
PCDHA11Q9Y5I1 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC26.5■■□□□ 1.83
PCDHA11Q9Y5I1 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC26.49■■□□□ 1.83
PCDHA11Q9Y5I1 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
PCDHA11Q9Y5I1 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
PCDHA11Q9Y5I1 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
PCDHA11Q9Y5I1 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
PCDHA11Q9Y5I1 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
PCDHA11Q9Y5I1 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
PCDHA11Q9Y5I1 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
PCDHA11Q9Y5I1 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
PCDHA11Q9Y5I1 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
PCDHA11Q9Y5I1 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
PCDHA11Q9Y5I1 UNC93B8-201ENST00000511903 705 ntBASIC26.48■■□□□ 1.83
PCDHA11Q9Y5I1 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
PCDHA11Q9Y5I1 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
PCDHA11Q9Y5I1 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
PCDHA11Q9Y5I1 KRT16P3-201ENST00000439127 1283 ntBASIC26.47■■□□□ 1.83
PCDHA11Q9Y5I1 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
PCDHA11Q9Y5I1 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
PCDHA11Q9Y5I1 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC26.46■■□□□ 1.83
PCDHA11Q9Y5I1 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
PCDHA11Q9Y5I1 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
PCDHA11Q9Y5I1 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
PCDHA11Q9Y5I1 AP002414.2-202ENST00000590929 1450 ntBASIC26.45■■□□□ 1.82
PCDHA11Q9Y5I1 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC26.45■■□□□ 1.82
PCDHA11Q9Y5I1 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC26.45■■□□□ 1.82
PCDHA11Q9Y5I1 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.82
PCDHA11Q9Y5I1 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC26.44■■□□□ 1.82
PCDHA11Q9Y5I1 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC26.44■■□□□ 1.82
PCDHA11Q9Y5I1 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC26.44■■□□□ 1.82
PCDHA11Q9Y5I1 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
PCDHA11Q9Y5I1 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC26.43■■□□□ 1.82
PCDHA11Q9Y5I1 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
PCDHA11Q9Y5I1 AC142086.6-201ENST00000621154 1765 ntBASIC26.43■■□□□ 1.82
PCDHA11Q9Y5I1 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
PCDHA11Q9Y5I1 AL139246.5-201ENST00000606645 996 ntBASIC26.43■■□□□ 1.82
PCDHA11Q9Y5I1 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC26.43■■□□□ 1.82
PCDHA11Q9Y5I1 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
PCDHA11Q9Y5I1 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC26.42■■□□□ 1.82
PCDHA11Q9Y5I1 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
PCDHA11Q9Y5I1 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC26.42■■□□□ 1.82
PCDHA11Q9Y5I1 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PCDHA11Q9Y5I1 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PCDHA11Q9Y5I1 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PCDHA11Q9Y5I1 AC022616.5-201ENST00000518796 181 ntBASIC26.41■■□□□ 1.82
PCDHA11Q9Y5I1 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC26.41■■□□□ 1.82
PCDHA11Q9Y5I1 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC26.41■■□□□ 1.82
PCDHA11Q9Y5I1 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC26.41■■□□□ 1.82
PCDHA11Q9Y5I1 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC26.41■■□□□ 1.82
PCDHA11Q9Y5I1 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
PCDHA11Q9Y5I1 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
PCDHA11Q9Y5I1 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC26.4■■□□□ 1.82
PCDHA11Q9Y5I1 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
PCDHA11Q9Y5I1 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
PCDHA11Q9Y5I1 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC26.39■■□□□ 1.82
PCDHA11Q9Y5I1 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
PCDHA11Q9Y5I1 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC26.39■■□□□ 1.82
PCDHA11Q9Y5I1 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC26.39■■□□□ 1.82
PCDHA11Q9Y5I1 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC26.39■■□□□ 1.82
PCDHA11Q9Y5I1 RALB-208ENST00000631312 311 ntTSL 5 BASIC26.39■■□□□ 1.82
PCDHA11Q9Y5I1 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
PCDHA11Q9Y5I1 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
PCDHA11Q9Y5I1 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC26.38■■□□□ 1.81
PCDHA11Q9Y5I1 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
PCDHA11Q9Y5I1 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
PCDHA11Q9Y5I1 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC26.38■■□□□ 1.81
PCDHA11Q9Y5I1 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
PCDHA11Q9Y5I1 NALT1-201ENST00000429224 738 ntTSL 5 BASIC26.37■■□□□ 1.81
PCDHA11Q9Y5I1 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC26.37■■□□□ 1.81
PCDHA11Q9Y5I1 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
PCDHA11Q9Y5I1 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
PCDHA11Q9Y5I1 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
PCDHA11Q9Y5I1 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC26.36■■□□□ 1.81
PCDHA11Q9Y5I1 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 258.4 ms