Protein–RNA interactions for Protein: Q9NY35

CLDND1, Claudin domain-containing protein 1, humanhuman

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1Q9NY35 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
CLDND1Q9NY35 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC25.7■■□□□ 1.7
CLDND1Q9NY35 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC25.7■■□□□ 1.7
CLDND1Q9NY35 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
CLDND1Q9NY35 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
CLDND1Q9NY35 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CLDND1Q9NY35 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CLDND1Q9NY35 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
CLDND1Q9NY35 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CLDND1Q9NY35 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC25.68■■□□□ 1.7
CLDND1Q9NY35 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC25.68■■□□□ 1.7
CLDND1Q9NY35 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CLDND1Q9NY35 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC25.68■■□□□ 1.7
CLDND1Q9NY35 AL139393.2-201ENST00000608721 2025 ntBASIC25.68■■□□□ 1.7
CLDND1Q9NY35 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC25.68■■□□□ 1.7
CLDND1Q9NY35 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC25.67■■□□□ 1.7
CLDND1Q9NY35 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC25.67■■□□□ 1.7
CLDND1Q9NY35 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC25.67■■□□□ 1.7
CLDND1Q9NY35 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC25.67■■□□□ 1.7
CLDND1Q9NY35 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC25.67■■□□□ 1.7
CLDND1Q9NY35 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC25.67■■□□□ 1.7
CLDND1Q9NY35 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CLDND1Q9NY35 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC25.66■■□□□ 1.7
CLDND1Q9NY35 KRT18P24-201ENST00000344739 1156 ntBASIC25.66■■□□□ 1.7
CLDND1Q9NY35 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CLDND1Q9NY35 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC25.66■■□□□ 1.7
CLDND1Q9NY35 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC25.66■■□□□ 1.7
CLDND1Q9NY35 AC131281.2-201ENST00000520478 145 ntBASIC25.66■■□□□ 1.7
CLDND1Q9NY35 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC25.66■■□□□ 1.7
CLDND1Q9NY35 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC25.66■■□□□ 1.7
CLDND1Q9NY35 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC25.66■■□□□ 1.7
CLDND1Q9NY35 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CLDND1Q9NY35 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC25.65■■□□□ 1.7
CLDND1Q9NY35 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CLDND1Q9NY35 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CLDND1Q9NY35 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC25.65■■□□□ 1.7
CLDND1Q9NY35 SRR-208ENST00000576848 588 ntTSL 4 BASIC25.65■■□□□ 1.7
CLDND1Q9NY35 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC25.65■■□□□ 1.7
CLDND1Q9NY35 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC25.64■■□□□ 1.7
CLDND1Q9NY35 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
CLDND1Q9NY35 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
CLDND1Q9NY35 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC25.64■■□□□ 1.69
CLDND1Q9NY35 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC25.63■■□□□ 1.69
CLDND1Q9NY35 AL136116.3-201ENST00000402907 1138 ntBASIC25.63■■□□□ 1.69
CLDND1Q9NY35 AC137630.3-201ENST00000607245 391 ntBASIC25.63■■□□□ 1.69
CLDND1Q9NY35 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC25.63■■□□□ 1.69
CLDND1Q9NY35 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
CLDND1Q9NY35 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC25.62■■□□□ 1.69
CLDND1Q9NY35 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CLDND1Q9NY35 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CLDND1Q9NY35 RPP21-222ENST00000433076 577 ntTSL 2 BASIC25.62■■□□□ 1.69
CLDND1Q9NY35 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CLDND1Q9NY35 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CLDND1Q9NY35 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC25.61■■□□□ 1.69
CLDND1Q9NY35 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC25.61■■□□□ 1.69
CLDND1Q9NY35 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC25.61■■□□□ 1.69
CLDND1Q9NY35 AC021242.3-201ENST00000607598 1377 ntBASIC25.6■■□□□ 1.69
CLDND1Q9NY35 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC25.6■■□□□ 1.69
CLDND1Q9NY35 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC25.6■■□□□ 1.69
CLDND1Q9NY35 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC25.6■■□□□ 1.69
CLDND1Q9NY35 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC25.6■■□□□ 1.69
CLDND1Q9NY35 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CLDND1Q9NY35 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC25.59■■□□□ 1.69
CLDND1Q9NY35 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC25.59■■□□□ 1.69
CLDND1Q9NY35 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC25.59■■□□□ 1.69
CLDND1Q9NY35 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC25.58■■□□□ 1.69
CLDND1Q9NY35 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC25.58■■□□□ 1.69
CLDND1Q9NY35 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC25.58■■□□□ 1.69
CLDND1Q9NY35 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CLDND1Q9NY35 ST7-205ENST00000393446 2114 ntTSL 5 BASIC25.58■■□□□ 1.69
CLDND1Q9NY35 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.68
CLDND1Q9NY35 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
CLDND1Q9NY35 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC25.57■■□□□ 1.68
CLDND1Q9NY35 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC25.57■■□□□ 1.68
CLDND1Q9NY35 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC25.57■■□□□ 1.68
CLDND1Q9NY35 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
CLDND1Q9NY35 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC25.56■■□□□ 1.68
CLDND1Q9NY35 KRT18P10-201ENST00000388836 1287 ntBASIC25.56■■□□□ 1.68
CLDND1Q9NY35 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC25.56■■□□□ 1.68
CLDND1Q9NY35 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC25.56■■□□□ 1.68
CLDND1Q9NY35 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC25.56■■□□□ 1.68
CLDND1Q9NY35 AC092028.1-203ENST00000608262 953 ntBASIC25.56■■□□□ 1.68
CLDND1Q9NY35 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC25.56■■□□□ 1.68
CLDND1Q9NY35 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
CLDND1Q9NY35 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC25.55■■□□□ 1.68
CLDND1Q9NY35 AC110285.6-201ENST00000617652 491 ntBASIC25.55■■□□□ 1.68
CLDND1Q9NY35 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
CLDND1Q9NY35 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
CLDND1Q9NY35 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC25.54■■□□□ 1.68
CLDND1Q9NY35 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC25.54■■□□□ 1.68
CLDND1Q9NY35 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC25.54■■□□□ 1.68
CLDND1Q9NY35 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC25.54■■□□□ 1.68
CLDND1Q9NY35 AC120024.1-201ENST00000562672 995 ntBASIC25.54■■□□□ 1.68
CLDND1Q9NY35 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC25.54■■□□□ 1.68
CLDND1Q9NY35 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC25.53■■□□□ 1.68
CLDND1Q9NY35 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
CLDND1Q9NY35 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC25.53■■□□□ 1.68
CLDND1Q9NY35 AC005837.3-201ENST00000612163 286 ntBASIC25.53■■□□□ 1.68
CLDND1Q9NY35 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
CLDND1Q9NY35 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC25.52■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms