Protein–RNA interactions for Protein: P78556

CCL20, C-C motif chemokine 20, humanhuman

Predictions only

Length 96 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL20P78556 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC19.06■□□□□ 0.64
CCL20P78556 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCL20P78556 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
CCL20P78556 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCL20P78556 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCL20P78556 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCL20P78556 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC19.06■□□□□ 0.64
CCL20P78556 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC19.06■□□□□ 0.64
CCL20P78556 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCL20P78556 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC19.06■□□□□ 0.64
CCL20P78556 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCL20P78556 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCL20P78556 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCL20P78556 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCL20P78556 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC19.05■□□□□ 0.64
CCL20P78556 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCL20P78556 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCL20P78556 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCL20P78556 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CCL20P78556 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC19.04■□□□□ 0.64
CCL20P78556 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC19.04■□□□□ 0.64
CCL20P78556 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCL20P78556 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CCL20P78556 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCL20P78556 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCL20P78556 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCL20P78556 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCL20P78556 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
CCL20P78556 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCL20P78556 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCL20P78556 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCL20P78556 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
CCL20P78556 AC096887.2-201ENST00000623443 1957 ntBASIC19.02■□□□□ 0.64
CCL20P78556 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CCL20P78556 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCL20P78556 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCL20P78556 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCL20P78556 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCL20P78556 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCL20P78556 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCL20P78556 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC19.01■□□□□ 0.63
CCL20P78556 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CCL20P78556 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCL20P78556 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CCL20P78556 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CCL20P78556 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CCL20P78556 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
CCL20P78556 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19■□□□□ 0.63
CCL20P78556 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCL20P78556 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCL20P78556 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC18.99■□□□□ 0.63
CCL20P78556 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
CCL20P78556 ME2-208ENST00000638937 2471 ntTSL 5 BASIC18.99■□□□□ 0.63
CCL20P78556 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC18.99■□□□□ 0.63
CCL20P78556 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC18.98■□□□□ 0.63
CCL20P78556 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC18.98■□□□□ 0.63
CCL20P78556 DUSP8P5-201ENST00000422884 1815 ntBASIC18.98■□□□□ 0.63
CCL20P78556 EED-207ENST00000528180 1745 ntTSL 5 BASIC18.98■□□□□ 0.63
CCL20P78556 DENR-202ENST00000455982 1052 ntTSL 5 BASIC18.98■□□□□ 0.63
CCL20P78556 AP002365.1-201ENST00000603448 772 ntBASIC18.98■□□□□ 0.63
CCL20P78556 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCL20P78556 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCL20P78556 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCL20P78556 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC18.97■□□□□ 0.63
CCL20P78556 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCL20P78556 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
CCL20P78556 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
CCL20P78556 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC18.97■□□□□ 0.63
CCL20P78556 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC18.97■□□□□ 0.63
CCL20P78556 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC18.97■□□□□ 0.63
CCL20P78556 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCL20P78556 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCL20P78556 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCL20P78556 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
CCL20P78556 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCL20P78556 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCL20P78556 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCL20P78556 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCL20P78556 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCL20P78556 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCL20P78556 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCL20P78556 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCL20P78556 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCL20P78556 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCL20P78556 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCL20P78556 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCL20P78556 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCL20P78556 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CCL20P78556 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCL20P78556 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCL20P78556 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCL20P78556 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCL20P78556 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCL20P78556 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CCL20P78556 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC18.94■□□□□ 0.62
CCL20P78556 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
CCL20P78556 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCL20P78556 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCL20P78556 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC18.94■□□□□ 0.62
CCL20P78556 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms