Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CD74P04233 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
CD74P04233 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CD74P04233 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CD74P04233 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
CD74P04233 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CD74P04233 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
CD74P04233 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CD74P04233 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CD74P04233 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.32■□□□□ 0.84
CD74P04233 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CD74P04233 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CD74P04233 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CD74P04233 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.32■□□□□ 0.84
CD74P04233 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CD74P04233 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CD74P04233 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.32■□□□□ 0.84
CD74P04233 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CD74P04233 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CD74P04233 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC20.32■□□□□ 0.84
CD74P04233 LINC01124-201ENST00000409786 2117 ntBASIC20.32■□□□□ 0.84
CD74P04233 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.31■□□□□ 0.84
CD74P04233 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CD74P04233 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CD74P04233 HNRNPLP2-201ENST00000568980 1570 ntBASIC20.31■□□□□ 0.84
CD74P04233 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CD74P04233 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CD74P04233 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CD74P04233 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CD74P04233 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CD74P04233 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC20.31■□□□□ 0.84
CD74P04233 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CD74P04233 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC20.3■□□□□ 0.84
CD74P04233 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CD74P04233 AP003733.4-201ENST00000623785 1697 ntBASIC20.3■□□□□ 0.84
CD74P04233 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
CD74P04233 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CD74P04233 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC20.3■□□□□ 0.84
CD74P04233 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC20.3■□□□□ 0.84
CD74P04233 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CD74P04233 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC20.3■□□□□ 0.84
CD74P04233 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CD74P04233 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC20.29■□□□□ 0.84
CD74P04233 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
CD74P04233 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CD74P04233 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CD74P04233 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CD74P04233 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CD74P04233 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CD74P04233 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.28■□□□□ 0.84
CD74P04233 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CD74P04233 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CD74P04233 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
CD74P04233 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CD74P04233 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CD74P04233 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CD74P04233 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
CD74P04233 AC097639.1-201ENST00000565519 1891 ntBASIC20.26■□□□□ 0.83
CD74P04233 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CD74P04233 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
CD74P04233 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CD74P04233 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CD74P04233 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CD74P04233 AC068473.5-201ENST00000616428 2072 ntBASIC20.26■□□□□ 0.83
CD74P04233 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CD74P04233 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CD74P04233 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CD74P04233 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CD74P04233 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CD74P04233 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.25■□□□□ 0.83
CD74P04233 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.25■□□□□ 0.83
CD74P04233 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.25■□□□□ 0.83
CD74P04233 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC20.25■□□□□ 0.83
CD74P04233 RPS2-210ENST00000530225 765 ntTSL 2 BASIC20.25■□□□□ 0.83
CD74P04233 SUZ12P1-203ENST00000578195 985 ntBASIC20.25■□□□□ 0.83
CD74P04233 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC20.25■□□□□ 0.83
CD74P04233 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.25■□□□□ 0.83
CD74P04233 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CD74P04233 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
CD74P04233 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC20.24■□□□□ 0.83
CD74P04233 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC20.24■□□□□ 0.83
CD74P04233 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CD74P04233 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.24■□□□□ 0.83
CD74P04233 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
CD74P04233 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC20.24■□□□□ 0.83
CD74P04233 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC20.24■□□□□ 0.83
CD74P04233 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CD74P04233 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.23■□□□□ 0.83
CD74P04233 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CD74P04233 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CD74P04233 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CD74P04233 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CD74P04233 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CD74P04233 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CD74P04233 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.23■□□□□ 0.83
CD74P04233 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CD74P04233 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
CD74P04233 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CD74P04233 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CD74P04233 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms