Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC37.26■■■■□ 3.56
RAPGEF3O95398 AC021242.3-201ENST00000607598 1377 ntBASIC37.26■■■■□ 3.55
RAPGEF3O95398 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC37.26■■■■□ 3.55
RAPGEF3O95398 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC37.25■■■■□ 3.55
RAPGEF3O95398 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC37.25■■■■□ 3.55
RAPGEF3O95398 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC37.24■■■■□ 3.55
RAPGEF3O95398 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC37.24■■■■□ 3.55
RAPGEF3O95398 KRT18P24-201ENST00000344739 1156 ntBASIC37.24■■■■□ 3.55
RAPGEF3O95398 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC37.24■■■■□ 3.55
RAPGEF3O95398 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC37.24■■■■□ 3.55
RAPGEF3O95398 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC37.24■■■■□ 3.55
RAPGEF3O95398 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC37.24■■■■□ 3.55
RAPGEF3O95398 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC37.23■■■■□ 3.55
RAPGEF3O95398 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC37.23■■■■□ 3.55
RAPGEF3O95398 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC37.23■■■■□ 3.55
RAPGEF3O95398 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC37.23■■■■□ 3.55
RAPGEF3O95398 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC37.23■■■■□ 3.55
RAPGEF3O95398 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC37.23■■■■□ 3.55
RAPGEF3O95398 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC37.22■■■■□ 3.55
RAPGEF3O95398 AP002414.2-202ENST00000590929 1450 ntBASIC37.22■■■■□ 3.55
RAPGEF3O95398 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC37.22■■■■□ 3.55
RAPGEF3O95398 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC37.22■■■■□ 3.55
RAPGEF3O95398 AC022616.5-201ENST00000518796 181 ntBASIC37.21■■■■□ 3.55
RAPGEF3O95398 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC37.21■■■■□ 3.55
RAPGEF3O95398 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC37.21■■■■□ 3.55
RAPGEF3O95398 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC37.2■■■■□ 3.55
RAPGEF3O95398 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC37.2■■■■□ 3.55
RAPGEF3O95398 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC37.2■■■■□ 3.55
RAPGEF3O95398 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC37.2■■■■□ 3.55
RAPGEF3O95398 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC37.2■■■■□ 3.55
RAPGEF3O95398 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC37.19■■■■□ 3.54
RAPGEF3O95398 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC37.19■■■■□ 3.54
RAPGEF3O95398 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC37.19■■■■□ 3.54
RAPGEF3O95398 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC37.19■■■■□ 3.54
RAPGEF3O95398 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC37.19■■■■□ 3.54
RAPGEF3O95398 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC37.19■■■■□ 3.54
RAPGEF3O95398 ABCB10P3-201ENST00000561950 2166 ntBASIC37.18■■■■□ 3.54
RAPGEF3O95398 AC096631.2-201ENST00000436136 790 ntBASIC37.17■■■■□ 3.54
RAPGEF3O95398 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC37.17■■■■□ 3.54
RAPGEF3O95398 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC37.17■■■■□ 3.54
RAPGEF3O95398 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC37.17■■■■□ 3.54
RAPGEF3O95398 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC37.16■■■■□ 3.54
RAPGEF3O95398 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC37.16■■■■□ 3.54
RAPGEF3O95398 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC37.16■■■■□ 3.54
RAPGEF3O95398 AC092028.1-203ENST00000608262 953 ntBASIC37.16■■■■□ 3.54
RAPGEF3O95398 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC37.15■■■■□ 3.54
RAPGEF3O95398 WHAMMP3-201ENST00000611636 1609 ntBASIC37.15■■■■□ 3.54
RAPGEF3O95398 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC37.15■■■■□ 3.54
RAPGEF3O95398 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC37.15■■■■□ 3.54
RAPGEF3O95398 AL117332.1-201ENST00000622628 974 ntBASIC37.15■■■■□ 3.54
RAPGEF3O95398 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC37.14■■■■□ 3.54
RAPGEF3O95398 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC37.13■■■■□ 3.53
RAPGEF3O95398 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC37.13■■■■□ 3.53
RAPGEF3O95398 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC37.12■■■■□ 3.53
RAPGEF3O95398 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC37.12■■■■□ 3.53
RAPGEF3O95398 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC37.11■■■■□ 3.53
RAPGEF3O95398 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC37.11■■■■□ 3.53
RAPGEF3O95398 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC37.11■■■■□ 3.53
RAPGEF3O95398 RARRES2P6-201ENST00000567333 442 ntBASIC37.11■■■■□ 3.53
RAPGEF3O95398 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC37.11■■■■□ 3.53
RAPGEF3O95398 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC37.11■■■■□ 3.53
RAPGEF3O95398 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC37.1■■■■□ 3.53
RAPGEF3O95398 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC37.1■■■■□ 3.53
RAPGEF3O95398 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC37.1■■■■□ 3.53
RAPGEF3O95398 GUK1-205ENST00000366722 850 ntTSL 3 BASIC37.09■■■■□ 3.53
RAPGEF3O95398 ZNRF2P3-201ENST00000424200 374 ntBASIC37.09■■■■□ 3.53
RAPGEF3O95398 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC37.09■■■■□ 3.53
RAPGEF3O95398 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC37.09■■■■□ 3.53
RAPGEF3O95398 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC37.08■■■■□ 3.53
RAPGEF3O95398 MIR4466-201ENST00000606121 54 ntBASIC37.08■■■■□ 3.53
RAPGEF3O95398 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC37.07■■■■□ 3.52
RAPGEF3O95398 AC120024.1-201ENST00000562672 995 ntBASIC37.07■■■■□ 3.52
RAPGEF3O95398 MIR3621-201ENST00000580529 85 ntBASIC37.07■■■■□ 3.52
RAPGEF3O95398 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC37.07■■■■□ 3.52
RAPGEF3O95398 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC37.07■■■■□ 3.52
RAPGEF3O95398 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC37.06■■■■□ 3.52
RAPGEF3O95398 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC37.06■■■■□ 3.52
RAPGEF3O95398 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC37.05■■■■□ 3.52
RAPGEF3O95398 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC37.05■■■■□ 3.52
RAPGEF3O95398 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC37.05■■■■□ 3.52
RAPGEF3O95398 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC37.05■■■■□ 3.52
RAPGEF3O95398 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC37.04■■■■□ 3.52
RAPGEF3O95398 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC37.04■■■■□ 3.52
RAPGEF3O95398 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC37.04■■■■□ 3.52
RAPGEF3O95398 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC37.04■■■■□ 3.52
RAPGEF3O95398 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC37.04■■■■□ 3.52
RAPGEF3O95398 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC37.04■■■■□ 3.52
RAPGEF3O95398 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC37.03■■■■□ 3.52
RAPGEF3O95398 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC37.03■■■■□ 3.52
RAPGEF3O95398 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC37.03■■■■□ 3.52
RAPGEF3O95398 AC133561.4-201ENST00000566112 224 ntBASIC37.03■■■■□ 3.52
RAPGEF3O95398 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC37.03■■■■□ 3.52
RAPGEF3O95398 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC37.02■■■■□ 3.52
RAPGEF3O95398 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC37.02■■■■□ 3.52
RAPGEF3O95398 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC37.02■■■■□ 3.52
RAPGEF3O95398 AC026271.2-201ENST00000428091 497 ntBASIC37.01■■■■□ 3.52
RAPGEF3O95398 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC37.01■■■■□ 3.52
RAPGEF3O95398 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC37.01■■■■□ 3.52
RAPGEF3O95398 EBPL-204ENST00000378272 766 ntTSL 3 BASIC37■■■■□ 3.51
RAPGEF3O95398 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC36.99■■■■□ 3.51
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms