Protein–RNA interactions for Protein: A2RU48

SMCO3, Single-pass membrane and coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO3A2RU48 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMCO3A2RU48 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SMCO3A2RU48 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.45■□□□□ 0.7
SMCO3A2RU48 CIB2-204ENST00000557846 934 ntTSL 3 BASIC19.45■□□□□ 0.7
SMCO3A2RU48 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMCO3A2RU48 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMCO3A2RU48 AC110285.7-201ENST00000624417 1536 ntBASIC19.45■□□□□ 0.7
SMCO3A2RU48 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMCO3A2RU48 WHAMMP3-201ENST00000611636 1609 ntBASIC19.44■□□□□ 0.7
SMCO3A2RU48 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMCO3A2RU48 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMCO3A2RU48 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMCO3A2RU48 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.44■□□□□ 0.7
SMCO3A2RU48 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.44■□□□□ 0.7
SMCO3A2RU48 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMCO3A2RU48 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMCO3A2RU48 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SMCO3A2RU48 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC19.43■□□□□ 0.7
SMCO3A2RU48 DUX4L28-201ENST00000623687 678 ntBASIC19.43■□□□□ 0.7
SMCO3A2RU48 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
SMCO3A2RU48 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMCO3A2RU48 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMCO3A2RU48 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SMCO3A2RU48 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMCO3A2RU48 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC19.42■□□□□ 0.7
SMCO3A2RU48 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC19.42■□□□□ 0.7
SMCO3A2RU48 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SMCO3A2RU48 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMCO3A2RU48 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMCO3A2RU48 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMCO3A2RU48 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
SMCO3A2RU48 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMCO3A2RU48 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SMCO3A2RU48 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMCO3A2RU48 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMCO3A2RU48 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SMCO3A2RU48 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SMCO3A2RU48 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.41■□□□□ 0.7
SMCO3A2RU48 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMCO3A2RU48 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SMCO3A2RU48 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SMCO3A2RU48 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMCO3A2RU48 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMCO3A2RU48 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SMCO3A2RU48 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMCO3A2RU48 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMCO3A2RU48 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC19.4■□□□□ 0.7
SMCO3A2RU48 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC19.39■□□□□ 0.69
SMCO3A2RU48 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
SMCO3A2RU48 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMCO3A2RU48 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC19.39■□□□□ 0.69
SMCO3A2RU48 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC19.39■□□□□ 0.69
SMCO3A2RU48 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SMCO3A2RU48 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SMCO3A2RU48 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SMCO3A2RU48 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMCO3A2RU48 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMCO3A2RU48 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SMCO3A2RU48 THRA-202ENST00000394121 2260 ntTSL 2 BASIC19.39■□□□□ 0.69
SMCO3A2RU48 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMCO3A2RU48 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMCO3A2RU48 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC19.38■□□□□ 0.69
SMCO3A2RU48 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.38■□□□□ 0.69
SMCO3A2RU48 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMCO3A2RU48 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMCO3A2RU48 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMCO3A2RU48 LINC00543-201ENST00000567234 1845 ntBASIC19.37■□□□□ 0.69
SMCO3A2RU48 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
SMCO3A2RU48 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMCO3A2RU48 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SMCO3A2RU48 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC19.37■□□□□ 0.69
SMCO3A2RU48 MIR3665-201ENST00000578708 105 ntBASIC19.37■□□□□ 0.69
SMCO3A2RU48 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMCO3A2RU48 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SMCO3A2RU48 AC133561.1-201ENST00000568600 2415 ntBASIC19.36■□□□□ 0.69
SMCO3A2RU48 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMCO3A2RU48 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMCO3A2RU48 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SMCO3A2RU48 ERN1-208ENST00000606895 2068 ntBASIC19.36■□□□□ 0.69
SMCO3A2RU48 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC19.36■□□□□ 0.69
SMCO3A2RU48 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC19.36■□□□□ 0.69
SMCO3A2RU48 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMCO3A2RU48 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMCO3A2RU48 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
SMCO3A2RU48 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SMCO3A2RU48 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SMCO3A2RU48 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SMCO3A2RU48 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.35■□□□□ 0.69
SMCO3A2RU48 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMCO3A2RU48 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SMCO3A2RU48 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMCO3A2RU48 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMCO3A2RU48 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMCO3A2RU48 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMCO3A2RU48 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMCO3A2RU48 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMCO3A2RU48 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMCO3A2RU48 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC19.34■□□□□ 0.69
SMCO3A2RU48 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SMCO3A2RU48 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms