Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
TRAV39A0A0B4J263 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRAV39A0A0B4J263 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRAV39A0A0B4J263 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRAV39A0A0B4J263 AC126177.7-201ENST00000547904 679 ntBASIC20.19■□□□□ 0.82
TRAV39A0A0B4J263 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRAV39A0A0B4J263 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC20.19■□□□□ 0.82
TRAV39A0A0B4J263 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV39A0A0B4J263 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV39A0A0B4J263 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
TRAV39A0A0B4J263 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
TRAV39A0A0B4J263 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV39A0A0B4J263 CEBPA-AS1-201ENST00000592982 2198 ntBASIC20.18■□□□□ 0.82
TRAV39A0A0B4J263 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
TRAV39A0A0B4J263 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAV39A0A0B4J263 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC20.17■□□□□ 0.82
TRAV39A0A0B4J263 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRAV39A0A0B4J263 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.17■□□□□ 0.82
TRAV39A0A0B4J263 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAV39A0A0B4J263 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRAV39A0A0B4J263 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC20.17■□□□□ 0.82
TRAV39A0A0B4J263 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRAV39A0A0B4J263 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC20.16■□□□□ 0.82
TRAV39A0A0B4J263 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV39A0A0B4J263 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV39A0A0B4J263 MIR639-201ENST00000384974 98 ntBASIC20.16■□□□□ 0.82
TRAV39A0A0B4J263 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV39A0A0B4J263 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV39A0A0B4J263 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV39A0A0B4J263 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV39A0A0B4J263 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV39A0A0B4J263 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV39A0A0B4J263 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV39A0A0B4J263 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV39A0A0B4J263 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV39A0A0B4J263 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV39A0A0B4J263 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV39A0A0B4J263 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV39A0A0B4J263 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
TRAV39A0A0B4J263 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAV39A0A0B4J263 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC20.15■□□□□ 0.82
TRAV39A0A0B4J263 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAV39A0A0B4J263 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TRAV39A0A0B4J263 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC20.15■□□□□ 0.82
TRAV39A0A0B4J263 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
TRAV39A0A0B4J263 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
TRAV39A0A0B4J263 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV39A0A0B4J263 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV39A0A0B4J263 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV39A0A0B4J263 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
TRAV39A0A0B4J263 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV39A0A0B4J263 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
TRAV39A0A0B4J263 AC096887.2-201ENST00000623443 1957 ntBASIC20.14■□□□□ 0.81
TRAV39A0A0B4J263 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
TRAV39A0A0B4J263 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TRAV39A0A0B4J263 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAV39A0A0B4J263 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TRAV39A0A0B4J263 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TRAV39A0A0B4J263 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
TRAV39A0A0B4J263 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV39A0A0B4J263 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV39A0A0B4J263 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV39A0A0B4J263 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV39A0A0B4J263 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV39A0A0B4J263 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV39A0A0B4J263 TPT1-202ENST00000379055 948 ntTSL 2 BASIC20.12■□□□□ 0.81
TRAV39A0A0B4J263 AC060814.1-201ENST00000554326 538 ntBASIC20.12■□□□□ 0.81
TRAV39A0A0B4J263 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC20.12■□□□□ 0.81
TRAV39A0A0B4J263 MOB2-207ENST00000614710 705 ntTSL 5 BASIC20.12■□□□□ 0.81
TRAV39A0A0B4J263 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV39A0A0B4J263 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV39A0A0B4J263 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC20.12■□□□□ 0.81
TRAV39A0A0B4J263 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV39A0A0B4J263 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRAV39A0A0B4J263 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRAV39A0A0B4J263 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRAV39A0A0B4J263 AL157400.5-201ENST00000507624 621 ntBASIC20.11■□□□□ 0.81
TRAV39A0A0B4J263 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
TRAV39A0A0B4J263 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRAV39A0A0B4J263 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
TRAV39A0A0B4J263 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAV39A0A0B4J263 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.1■□□□□ 0.81
TRAV39A0A0B4J263 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
TRAV39A0A0B4J263 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV39A0A0B4J263 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV39A0A0B4J263 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.09■□□□□ 0.81
TRAV39A0A0B4J263 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV39A0A0B4J263 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV39A0A0B4J263 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV39A0A0B4J263 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV39A0A0B4J263 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
TRAV39A0A0B4J263 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRAV39A0A0B4J263 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
TRAV39A0A0B4J263 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TRAV39A0A0B4J263 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRAV39A0A0B4J263 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC20.07■□□□□ 0.8
TRAV39A0A0B4J263 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRAV39A0A0B4J263 MBP-237ENST00000579129 1052 ntTSL 5 BASIC20.07■□□□□ 0.8
TRAV39A0A0B4J263 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRAV39A0A0B4J263 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms