Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
TREX1Q9NSU2 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
TREX1Q9NSU2 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.17■□□□□ 0.34
TREX1Q9NSU2 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.17■□□□□ 0.34
TREX1Q9NSU2 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC17.17■□□□□ 0.34
TREX1Q9NSU2 AL355877.3-201ENST00000622820 899 ntBASIC17.17■□□□□ 0.34
TREX1Q9NSU2 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.17■□□□□ 0.34
TREX1Q9NSU2 AL356309.3-201ENST00000624132 1934 ntBASIC17.17■□□□□ 0.34
TREX1Q9NSU2 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TREX1Q9NSU2 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
TREX1Q9NSU2 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.17■□□□□ 0.34
TREX1Q9NSU2 AL590787.1-201ENST00000568856 1315 ntBASIC17.17■□□□□ 0.34
TREX1Q9NSU2 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
TREX1Q9NSU2 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 TBCB-205ENST00000585746 875 ntTSL 3 BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 MTDHP3-201ENST00000594186 672 ntBASIC17.16■□□□□ 0.34
TREX1Q9NSU2 AC064862.7-201ENST00000604520 867 ntBASIC17.16■□□□□ 0.34
TREX1Q9NSU2 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TREX1Q9NSU2 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 PCDHB17P-201ENST00000539533 2393 ntBASIC17.15■□□□□ 0.34
TREX1Q9NSU2 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 FGFR3P6-201ENST00000457012 610 ntBASIC17.15■□□□□ 0.34
TREX1Q9NSU2 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 REXO1L6P-202ENST00000619970 1078 ntBASIC17.15■□□□□ 0.34
TREX1Q9NSU2 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TREX1Q9NSU2 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.34
TREX1Q9NSU2 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
TREX1Q9NSU2 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.34
TREX1Q9NSU2 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.34
TREX1Q9NSU2 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TREX1Q9NSU2 NCF1C-201ENST00000438382 1427 ntBASIC17.14■□□□□ 0.33
TREX1Q9NSU2 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
TREX1Q9NSU2 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms