Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC22.01■■□□□ 1.11
SHANK3Q9BYB0 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC22.01■■□□□ 1.11
SHANK3Q9BYB0 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
SHANK3Q9BYB0 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC22.01■■□□□ 1.11
SHANK3Q9BYB0 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC22.01■■□□□ 1.11
SHANK3Q9BYB0 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SHANK3Q9BYB0 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC22.01■■□□□ 1.11
SHANK3Q9BYB0 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
SHANK3Q9BYB0 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SHANK3Q9BYB0 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
SHANK3Q9BYB0 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC22.01■■□□□ 1.11
SHANK3Q9BYB0 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC22.01■■□□□ 1.11
SHANK3Q9BYB0 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SHANK3Q9BYB0 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC22■■□□□ 1.11
SHANK3Q9BYB0 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC22■■□□□ 1.11
SHANK3Q9BYB0 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC22■■□□□ 1.11
SHANK3Q9BYB0 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
SHANK3Q9BYB0 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC22■■□□□ 1.11
SHANK3Q9BYB0 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC22■■□□□ 1.11
SHANK3Q9BYB0 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
SHANK3Q9BYB0 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC22■■□□□ 1.11
SHANK3Q9BYB0 LY6E-204ENST00000519546 971 ntTSL 2 BASIC22■■□□□ 1.11
SHANK3Q9BYB0 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC22■■□□□ 1.11
SHANK3Q9BYB0 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC22■■□□□ 1.11
SHANK3Q9BYB0 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SHANK3Q9BYB0 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC22■■□□□ 1.11
SHANK3Q9BYB0 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
SHANK3Q9BYB0 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SHANK3Q9BYB0 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC22■■□□□ 1.11
SHANK3Q9BYB0 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
SHANK3Q9BYB0 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
SHANK3Q9BYB0 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SHANK3Q9BYB0 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
SHANK3Q9BYB0 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC22■■□□□ 1.11
SHANK3Q9BYB0 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC22■■□□□ 1.11
SHANK3Q9BYB0 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC22■■□□□ 1.11
SHANK3Q9BYB0 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC22■■□□□ 1.11
SHANK3Q9BYB0 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
SHANK3Q9BYB0 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC22■■□□□ 1.11
SHANK3Q9BYB0 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC22■■□□□ 1.11
SHANK3Q9BYB0 CYP2A7P1-201ENST00000595391 815 ntBASIC22■■□□□ 1.11
SHANK3Q9BYB0 AC009118.2-201ENST00000613275 655 ntBASIC22■■□□□ 1.11
SHANK3Q9BYB0 IGHV3-72-202ENST00000621503 303 ntBASIC22■■□□□ 1.11
SHANK3Q9BYB0 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
SHANK3Q9BYB0 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC22■■□□□ 1.11
SHANK3Q9BYB0 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC22■■□□□ 1.11
SHANK3Q9BYB0 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC22■■□□□ 1.11
SHANK3Q9BYB0 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SHANK3Q9BYB0 AC104581.1-202ENST00000635932 2618 ntBASIC21.99■■□□□ 1.11
SHANK3Q9BYB0 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC21.99■■□□□ 1.11
SHANK3Q9BYB0 AC012317.2-201ENST00000623305 2251 ntBASIC21.99■■□□□ 1.11
SHANK3Q9BYB0 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SHANK3Q9BYB0 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SHANK3Q9BYB0 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SHANK3Q9BYB0 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC21.99■■□□□ 1.11
SHANK3Q9BYB0 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SHANK3Q9BYB0 SPTLC1P1-201ENST00000447199 261 ntBASIC21.99■■□□□ 1.11
SHANK3Q9BYB0 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC21.99■■□□□ 1.11
SHANK3Q9BYB0 RARRES2P9-201ENST00000565168 469 ntBASIC21.99■■□□□ 1.11
SHANK3Q9BYB0 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC21.99■■□□□ 1.11
SHANK3Q9BYB0 AL132655.2-201ENST00000596276 594 ntBASIC21.99■■□□□ 1.11
SHANK3Q9BYB0 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SHANK3Q9BYB0 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
SHANK3Q9BYB0 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SHANK3Q9BYB0 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
SHANK3Q9BYB0 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC21.98■■□□□ 1.11
SHANK3Q9BYB0 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
SHANK3Q9BYB0 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
SHANK3Q9BYB0 AP3S2-216ENST00000617003 1561 ntBASIC21.98■■□□□ 1.11
SHANK3Q9BYB0 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC21.98■■□□□ 1.11
SHANK3Q9BYB0 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
SHANK3Q9BYB0 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC21.98■■□□□ 1.11
SHANK3Q9BYB0 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC21.98■■□□□ 1.11
SHANK3Q9BYB0 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
SHANK3Q9BYB0 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC21.98■■□□□ 1.11
SHANK3Q9BYB0 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SHANK3Q9BYB0 CDK2AP2P3-201ENST00000422476 372 ntBASIC21.98■■□□□ 1.11
SHANK3Q9BYB0 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC21.98■■□□□ 1.11
SHANK3Q9BYB0 MIR4492-201ENST00000581627 80 ntBASIC21.98■■□□□ 1.11
SHANK3Q9BYB0 COQ4-205ENST00000609948 956 ntTSL 2 BASIC21.98■■□□□ 1.11
SHANK3Q9BYB0 TEX28P1-201ENST00000613479 1221 ntBASIC21.98■■□□□ 1.11
SHANK3Q9BYB0 TEX28P2-201ENST00000617764 1221 ntBASIC21.98■■□□□ 1.11
SHANK3Q9BYB0 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC21.98■■□□□ 1.11
SHANK3Q9BYB0 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
SHANK3Q9BYB0 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SHANK3Q9BYB0 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
SHANK3Q9BYB0 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SHANK3Q9BYB0 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SHANK3Q9BYB0 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC21.98■■□□□ 1.11
SHANK3Q9BYB0 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 AL596325.1-201ENST00000563991 1082 ntBASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC21.97■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms