Protein–RNA interactions for Protein: Q9BXA9

SALL3, Sal-like protein 3, humanhuman

Predictions only

Length 1,300 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SALL3Q9BXA9 CENPM-204ENST00000402420 688 ntTSL 5 BASIC20.86■□□□□ 0.93
SALL3Q9BXA9 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC20.86■□□□□ 0.93
SALL3Q9BXA9 RPS15P9-201ENST00000494093 319 ntBASIC20.86■□□□□ 0.93
SALL3Q9BXA9 AC107918.2-201ENST00000530817 355 ntBASIC20.86■□□□□ 0.93
SALL3Q9BXA9 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SALL3Q9BXA9 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SALL3Q9BXA9 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SALL3Q9BXA9 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SALL3Q9BXA9 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SALL3Q9BXA9 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SALL3Q9BXA9 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SALL3Q9BXA9 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC20.86■□□□□ 0.93
SALL3Q9BXA9 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SALL3Q9BXA9 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC20.86■□□□□ 0.93
SALL3Q9BXA9 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SALL3Q9BXA9 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SALL3Q9BXA9 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.86■□□□□ 0.93
SALL3Q9BXA9 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SALL3Q9BXA9 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
SALL3Q9BXA9 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
SALL3Q9BXA9 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
SALL3Q9BXA9 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC20.85■□□□□ 0.93
SALL3Q9BXA9 LINC00895-201ENST00000629028 1637 ntBASIC20.85■□□□□ 0.93
SALL3Q9BXA9 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC20.85■□□□□ 0.93
SALL3Q9BXA9 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SALL3Q9BXA9 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC20.85■□□□□ 0.93
SALL3Q9BXA9 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC20.85■□□□□ 0.93
SALL3Q9BXA9 TUBB8P12-201ENST00000308911 1335 ntBASIC20.85■□□□□ 0.93
SALL3Q9BXA9 TUBB7P-202ENST00000428444 1305 ntBASIC20.85■□□□□ 0.93
SALL3Q9BXA9 TUBB8P7-204ENST00000567960 1332 ntBASIC20.85■□□□□ 0.93
SALL3Q9BXA9 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC20.85■□□□□ 0.93
SALL3Q9BXA9 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SALL3Q9BXA9 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC20.85■□□□□ 0.93
SALL3Q9BXA9 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC20.85■□□□□ 0.93
SALL3Q9BXA9 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC20.85■□□□□ 0.93
SALL3Q9BXA9 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC20.85■□□□□ 0.93
SALL3Q9BXA9 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC20.85■□□□□ 0.93
SALL3Q9BXA9 AF228730.7-201ENST00000641842 219 ntBASIC20.85■□□□□ 0.93
SALL3Q9BXA9 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC20.85■□□□□ 0.93
SALL3Q9BXA9 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SALL3Q9BXA9 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SALL3Q9BXA9 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SALL3Q9BXA9 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
SALL3Q9BXA9 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SALL3Q9BXA9 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SALL3Q9BXA9 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
SALL3Q9BXA9 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC20.85■□□□□ 0.93
SALL3Q9BXA9 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SALL3Q9BXA9 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SALL3Q9BXA9 KRT8P49-201ENST00000604166 1432 ntBASIC20.84■□□□□ 0.93
SALL3Q9BXA9 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SALL3Q9BXA9 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SALL3Q9BXA9 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC20.84■□□□□ 0.93
SALL3Q9BXA9 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC20.84■□□□□ 0.93
SALL3Q9BXA9 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC20.84■□□□□ 0.93
SALL3Q9BXA9 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC20.84■□□□□ 0.93
SALL3Q9BXA9 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SALL3Q9BXA9 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SALL3Q9BXA9 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SALL3Q9BXA9 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SALL3Q9BXA9 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SALL3Q9BXA9 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SALL3Q9BXA9 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC20.84■□□□□ 0.93
SALL3Q9BXA9 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC20.84■□□□□ 0.93
SALL3Q9BXA9 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SALL3Q9BXA9 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC20.84■□□□□ 0.93
SALL3Q9BXA9 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SALL3Q9BXA9 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SALL3Q9BXA9 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SALL3Q9BXA9 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC20.83■□□□□ 0.93
SALL3Q9BXA9 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SALL3Q9BXA9 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC20.83■□□□□ 0.93
SALL3Q9BXA9 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC20.83■□□□□ 0.93
SALL3Q9BXA9 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SALL3Q9BXA9 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC20.83■□□□□ 0.93
SALL3Q9BXA9 AC009078.2-202ENST00000463353 338 ntBASIC20.83■□□□□ 0.93
SALL3Q9BXA9 AC136632.2-201ENST00000512891 861 ntBASIC20.83■□□□□ 0.93
SALL3Q9BXA9 MOK-208ENST00000519058 917 ntTSL 2 BASIC20.83■□□□□ 0.93
SALL3Q9BXA9 OR7E47P-204ENST00000575924 449 ntBASIC20.83■□□□□ 0.93
SALL3Q9BXA9 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SALL3Q9BXA9 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC20.83■□□□□ 0.93
SALL3Q9BXA9 AC008667.4-201ENST00000607370 168 ntBASIC20.83■□□□□ 0.93
SALL3Q9BXA9 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SALL3Q9BXA9 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SALL3Q9BXA9 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SALL3Q9BXA9 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
SALL3Q9BXA9 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
SALL3Q9BXA9 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC20.83■□□□□ 0.93
SALL3Q9BXA9 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SALL3Q9BXA9 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SALL3Q9BXA9 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
SALL3Q9BXA9 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
SALL3Q9BXA9 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC20.83■□□□□ 0.92
SALL3Q9BXA9 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SALL3Q9BXA9 AC092171.3-201ENST00000610122 2651 ntBASIC20.83■□□□□ 0.92
SALL3Q9BXA9 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
SALL3Q9BXA9 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC20.83■□□□□ 0.92
SALL3Q9BXA9 SNX33P1-201ENST00000592116 1762 ntBASIC20.83■□□□□ 0.92
SALL3Q9BXA9 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC20.83■□□□□ 0.92
SALL3Q9BXA9 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms