Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 HLA-F-220ENST00000434407 884 ntBASIC15.1■□□□□ 0.01
NKX3-1Q99801 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 COX11P1-201ENST00000489116 835 ntBASIC15.1■□□□□ 0.01
NKX3-1Q99801 LINC01238-205ENST00000567549 1107 ntBASIC15.1■□□□□ 0.01
NKX3-1Q99801 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC15.1■□□□□ 0.01
NKX3-1Q99801 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC15.1■□□□□ 0.01
NKX3-1Q99801 LITAF-220ENST00000620789 692 ntTSL 5 BASIC15.1■□□□□ 0.01
NKX3-1Q99801 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC15.1■□□□□ 0.01
NKX3-1Q99801 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
NKX3-1Q99801 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 AC010460.3-201ENST00000511359 1579 ntBASIC15.1■□□□□ 0.01
NKX3-1Q99801 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.1■□□□□ 0.01
NKX3-1Q99801 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC15.09■□□□□ 0.01
NKX3-1Q99801 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX3-1Q99801 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX3-1Q99801 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
NKX3-1Q99801 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX3-1Q99801 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX3-1Q99801 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC15.09■□□□□ 0.01
NKX3-1Q99801 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC15.09■□□□□ 0.01
NKX3-1Q99801 MED25-212ENST00000618715 1467 ntTSL 5 BASIC15.09■□□□□ 0.01
NKX3-1Q99801 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX3-1Q99801 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX3-1Q99801 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX3-1Q99801 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX3-1Q99801 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.09■□□□□ 0.01
NKX3-1Q99801 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
NKX3-1Q99801 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
NKX3-1Q99801 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX3-1Q99801 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX3-1Q99801 COPE-203ENST00000351079 907 ntTSL 2 BASIC15.09■□□□□ 0.01
NKX3-1Q99801 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX3-1Q99801 AC117947.1-201ENST00000427448 529 ntBASIC15.09■□□□□ 0.01
NKX3-1Q99801 MTCL1P1-201ENST00000446207 792 ntBASIC15.09■□□□□ 0.01
NKX3-1Q99801 KRT18P38-201ENST00000449496 1282 ntBASIC15.09■□□□□ 0.01
NKX3-1Q99801 RNF146-204ENST00000476956 884 ntTSL 2 BASIC15.09■□□□□ 0.01
NKX3-1Q99801 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX3-1Q99801 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC15.09■□□□□ 0.01
NKX3-1Q99801 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX3-1Q99801 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC15.09■□□□□ 0.01
NKX3-1Q99801 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC15.09■□□□□ 0.01
NKX3-1Q99801 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC15.09■□□□□ 0.01
NKX3-1Q99801 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
NKX3-1Q99801 TK1-204ENST00000590430 683 ntTSL 3 BASIC15.09■□□□□ 0.01
NKX3-1Q99801 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC15.09■□□□□ 0.01
NKX3-1Q99801 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
NKX3-1Q99801 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC15.09■□□□□ 0.01
NKX3-1Q99801 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX3-1Q99801 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
NKX3-1Q99801 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC15.09■□□□□ 0.01
NKX3-1Q99801 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC15.09■□□□□ 0.01
NKX3-1Q99801 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC15.09■□□□□ 0.01
NKX3-1Q99801 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
NKX3-1Q99801 AGK-211ENST00000629555 2765 ntTSL 5 BASIC15.09■□□□□ 0.01
NKX3-1Q99801 DOC2GP-204ENST00000639052 2548 ntBASIC15.09■□□□□ 0.01
NKX3-1Q99801 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX3-1Q99801 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX3-1Q99801 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX3-1Q99801 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX3-1Q99801 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
NKX3-1Q99801 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
NKX3-1Q99801 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0.01
NKX3-1Q99801 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
NKX3-1Q99801 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
NKX3-1Q99801 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.08■□□□□ 0.01
NKX3-1Q99801 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
NKX3-1Q99801 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC15.08■□□□□ 0.01
NKX3-1Q99801 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
NKX3-1Q99801 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
NKX3-1Q99801 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.08■□□□□ 0
NKX3-1Q99801 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC15.08■□□□□ 0
NKX3-1Q99801 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.08■□□□□ 0
NKX3-1Q99801 PC-208ENST00000529047 1607 ntTSL 3 BASIC15.08■□□□□ 0
NKX3-1Q99801 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
NKX3-1Q99801 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
NKX3-1Q99801 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC15.08■□□□□ 0
NKX3-1Q99801 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC15.08■□□□□ 0
NKX3-1Q99801 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC15.08■□□□□ 0
NKX3-1Q99801 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC15.08■□□□□ 0
NKX3-1Q99801 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC15.08■□□□□ 0
NKX3-1Q99801 IGHGP-201ENST00000390555 1178 ntBASIC15.08■□□□□ 0
NKX3-1Q99801 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
NKX3-1Q99801 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms