Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SPENQ96T58 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC15.37■□□□□ 0.05
SPENQ96T58 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC15.37■□□□□ 0.05
SPENQ96T58 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC15.37■□□□□ 0.05
SPENQ96T58 AC245100.3-201ENST00000441281 285 ntBASIC15.37■□□□□ 0.05
SPENQ96T58 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC15.37■□□□□ 0.05
SPENQ96T58 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SPENQ96T58 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
SPENQ96T58 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC15.37■□□□□ 0.05
SPENQ96T58 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
SPENQ96T58 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
SPENQ96T58 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SPENQ96T58 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC15.37■□□□□ 0.05
SPENQ96T58 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SPENQ96T58 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC15.37■□□□□ 0.05
SPENQ96T58 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC15.37■□□□□ 0.05
SPENQ96T58 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
SPENQ96T58 MIR1909-201ENST00000411312 80 ntBASIC15.37■□□□□ 0.05
SPENQ96T58 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC15.37■□□□□ 0.05
SPENQ96T58 RBPMS2P1-201ENST00000437762 623 ntBASIC15.37■□□□□ 0.05
SPENQ96T58 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SPENQ96T58 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC15.37■□□□□ 0.05
SPENQ96T58 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC15.37■□□□□ 0.05
SPENQ96T58 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SPENQ96T58 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SPENQ96T58 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SPENQ96T58 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SPENQ96T58 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.37■□□□□ 0.05
SPENQ96T58 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
SPENQ96T58 BICD1-207ENST00000551848 1962 ntBASIC15.37■□□□□ 0.05
SPENQ96T58 LYSMD4-203ENST00000378904 2122 ntBASIC15.37■□□□□ 0.05
SPENQ96T58 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SPENQ96T58 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SPENQ96T58 MIR346-201ENST00000362234 95 ntBASIC15.37■□□□□ 0.05
SPENQ96T58 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
SPENQ96T58 TSSK5P-201ENST00000423978 907 ntBASIC15.37■□□□□ 0.05
SPENQ96T58 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC15.37■□□□□ 0.05
SPENQ96T58 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC15.37■□□□□ 0.05
SPENQ96T58 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SPENQ96T58 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC15.37■□□□□ 0.05
SPENQ96T58 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.37■□□□□ 0.05
SPENQ96T58 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SPENQ96T58 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
SPENQ96T58 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
SPENQ96T58 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
SPENQ96T58 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC15.37■□□□□ 0.05
SPENQ96T58 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SPENQ96T58 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SPENQ96T58 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SPENQ96T58 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SPENQ96T58 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
SPENQ96T58 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SPENQ96T58 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC15.36■□□□□ 0.05
SPENQ96T58 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
SPENQ96T58 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC15.36■□□□□ 0.05
SPENQ96T58 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
SPENQ96T58 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC15.36■□□□□ 0.05
SPENQ96T58 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC15.36■□□□□ 0.05
SPENQ96T58 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC15.36■□□□□ 0.05
SPENQ96T58 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC15.36■□□□□ 0.05
SPENQ96T58 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC15.36■□□□□ 0.05
SPENQ96T58 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SPENQ96T58 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SPENQ96T58 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.36■□□□□ 0.05
SPENQ96T58 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.36■□□□□ 0.05
SPENQ96T58 AC079776.1-201ENST00000401540 1152 ntBASIC15.36■□□□□ 0.05
SPENQ96T58 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SPENQ96T58 RN7SL692P-201ENST00000464677 288 ntBASIC15.36■□□□□ 0.05
SPENQ96T58 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC15.36■□□□□ 0.05
SPENQ96T58 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SPENQ96T58 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.36■□□□□ 0.05
SPENQ96T58 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SPENQ96T58 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC15.36■□□□□ 0.05
SPENQ96T58 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC15.36■□□□□ 0.05
SPENQ96T58 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
SPENQ96T58 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SPENQ96T58 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC15.36■□□□□ 0.05
SPENQ96T58 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
SPENQ96T58 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SPENQ96T58 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SPENQ96T58 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
SPENQ96T58 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
SPENQ96T58 COX11-202ENST00000571584 1108 ntTSL 2 BASIC15.36■□□□□ 0.05
SPENQ96T58 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC15.36■□□□□ 0.05
SPENQ96T58 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.36■□□□□ 0.05
SPENQ96T58 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC15.35■□□□□ 0.05
SPENQ96T58 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SPENQ96T58 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC15.35■□□□□ 0.05
SPENQ96T58 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SPENQ96T58 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SPENQ96T58 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC15.35■□□□□ 0.05
SPENQ96T58 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC15.35■□□□□ 0.05
SPENQ96T58 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SPENQ96T58 AC069120.2-201ENST00000524091 540 ntBASIC15.35■□□□□ 0.05
SPENQ96T58 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC15.35■□□□□ 0.05
SPENQ96T58 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SPENQ96T58 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC15.35■□□□□ 0.05
SPENQ96T58 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC15.35■□□□□ 0.05
SPENQ96T58 NME9-203ENST00000383180 2133 ntTSL 2 BASIC15.35■□□□□ 0.05
SPENQ96T58 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms