Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.12■□□□□ 0.33
VPS35Q96QK1 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS35Q96QK1 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS35Q96QK1 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.12■□□□□ 0.33
VPS35Q96QK1 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS35Q96QK1 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS35Q96QK1 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS35Q96QK1 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.12■□□□□ 0.33
VPS35Q96QK1 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS35Q96QK1 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS35Q96QK1 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.12■□□□□ 0.33
VPS35Q96QK1 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
VPS35Q96QK1 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.12■□□□□ 0.33
VPS35Q96QK1 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS35Q96QK1 AC073621.1-201ENST00000392730 636 ntBASIC17.12■□□□□ 0.33
VPS35Q96QK1 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
VPS35Q96QK1 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.12■□□□□ 0.33
VPS35Q96QK1 AC105339.3-201ENST00000560043 636 ntBASIC17.12■□□□□ 0.33
VPS35Q96QK1 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC17.12■□□□□ 0.33
VPS35Q96QK1 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC17.12■□□□□ 0.33
VPS35Q96QK1 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.12■□□□□ 0.33
VPS35Q96QK1 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS35Q96QK1 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.12■□□□□ 0.33
VPS35Q96QK1 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.12■□□□□ 0.33
VPS35Q96QK1 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS35Q96QK1 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS35Q96QK1 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS35Q96QK1 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.12■□□□□ 0.33
VPS35Q96QK1 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
VPS35Q96QK1 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.12■□□□□ 0.33
VPS35Q96QK1 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS35Q96QK1 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS35Q96QK1 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS35Q96QK1 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS35Q96QK1 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
VPS35Q96QK1 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS35Q96QK1 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS35Q96QK1 CROCCP2-202ENST00000412962 2773 ntBASIC17.11■□□□□ 0.33
VPS35Q96QK1 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS35Q96QK1 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
VPS35Q96QK1 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
VPS35Q96QK1 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS35Q96QK1 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS35Q96QK1 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS35Q96QK1 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS35Q96QK1 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS35Q96QK1 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.11■□□□□ 0.33
VPS35Q96QK1 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
VPS35Q96QK1 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS35Q96QK1 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.11■□□□□ 0.33
VPS35Q96QK1 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
VPS35Q96QK1 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS35Q96QK1 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
VPS35Q96QK1 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.11■□□□□ 0.33
VPS35Q96QK1 SLC25A1P3-201ENST00000395415 828 ntBASIC17.11■□□□□ 0.33
VPS35Q96QK1 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.11■□□□□ 0.33
VPS35Q96QK1 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS35Q96QK1 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.11■□□□□ 0.33
VPS35Q96QK1 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS35Q96QK1 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.11■□□□□ 0.33
VPS35Q96QK1 AC012640.2-201ENST00000561606 901 ntBASIC17.11■□□□□ 0.33
VPS35Q96QK1 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS35Q96QK1 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
VPS35Q96QK1 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS35Q96QK1 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
VPS35Q96QK1 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
VPS35Q96QK1 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS35Q96QK1 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS35Q96QK1 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS35Q96QK1 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS35Q96QK1 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
VPS35Q96QK1 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
VPS35Q96QK1 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS35Q96QK1 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
VPS35Q96QK1 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS35Q96QK1 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS35Q96QK1 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS35Q96QK1 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
VPS35Q96QK1 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS35Q96QK1 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS35Q96QK1 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.1■□□□□ 0.33
VPS35Q96QK1 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS35Q96QK1 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.1■□□□□ 0.33
VPS35Q96QK1 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS35Q96QK1 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS35Q96QK1 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
VPS35Q96QK1 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS35Q96QK1 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS35Q96QK1 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17.1■□□□□ 0.33
VPS35Q96QK1 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS35Q96QK1 AL049840.3-201ENST00000602669 611 ntBASIC17.1■□□□□ 0.33
VPS35Q96QK1 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC17.1■□□□□ 0.33
VPS35Q96QK1 PGM5P2-202ENST00000637225 1043 ntBASIC17.1■□□□□ 0.33
VPS35Q96QK1 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS35Q96QK1 AL590787.1-201ENST00000568856 1315 ntBASIC17.1■□□□□ 0.33
VPS35Q96QK1 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS35Q96QK1 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS35Q96QK1 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS35Q96QK1 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
VPS35Q96QK1 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms