Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 SATB1-217ENST00000493952 626 ntTSL 3 BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 MMP17-203ENST00000535004 719 ntTSL 3 BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 AC003101.2-201ENST00000612557 442 ntBASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 AC093010.1-201ENST00000473625 1624 ntBASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMC1BQ8NDV3 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SMC1BQ8NDV3 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
SMC1BQ8NDV3 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.29■□□□□ 0.84
SMC1BQ8NDV3 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMC1BQ8NDV3 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.29■□□□□ 0.84
SMC1BQ8NDV3 ESPNP-201ENST00000270691 2015 ntBASIC20.29■□□□□ 0.84
SMC1BQ8NDV3 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SMC1BQ8NDV3 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
SMC1BQ8NDV3 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SMC1BQ8NDV3 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
SMC1BQ8NDV3 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMC1BQ8NDV3 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SMC1BQ8NDV3 ACTBP11-201ENST00000436287 1126 ntBASIC20.29■□□□□ 0.84
SMC1BQ8NDV3 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC20.29■□□□□ 0.84
SMC1BQ8NDV3 TTTY23B-201ENST00000442790 549 ntBASIC20.29■□□□□ 0.84
SMC1BQ8NDV3 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
SMC1BQ8NDV3 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SMC1BQ8NDV3 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC20.29■□□□□ 0.84
SMC1BQ8NDV3 AC007967.4-201ENST00000614700 386 ntBASIC20.29■□□□□ 0.84
SMC1BQ8NDV3 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMC1BQ8NDV3 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SMC1BQ8NDV3 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
SMC1BQ8NDV3 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SMC1BQ8NDV3 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
SMC1BQ8NDV3 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
SMC1BQ8NDV3 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC1BQ8NDV3 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC1BQ8NDV3 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC1BQ8NDV3 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC1BQ8NDV3 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.28■□□□□ 0.84
SMC1BQ8NDV3 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC1BQ8NDV3 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC20.28■□□□□ 0.84
SMC1BQ8NDV3 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC20.28■□□□□ 0.84
SMC1BQ8NDV3 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC20.28■□□□□ 0.84
SMC1BQ8NDV3 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC20.28■□□□□ 0.84
SMC1BQ8NDV3 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC20.28■□□□□ 0.84
SMC1BQ8NDV3 AC008494.3-201ENST00000606615 944 ntBASIC20.28■□□□□ 0.84
SMC1BQ8NDV3 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC20.28■□□□□ 0.84
SMC1BQ8NDV3 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC1BQ8NDV3 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SMC1BQ8NDV3 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC1BQ8NDV3 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC1BQ8NDV3 AL032819.2-201ENST00000624543 2162 ntBASIC20.28■□□□□ 0.84
SMC1BQ8NDV3 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMC1BQ8NDV3 AC087499.5-201ENST00000452760 1342 ntBASIC20.27■□□□□ 0.84
SMC1BQ8NDV3 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC20.27■□□□□ 0.84
SMC1BQ8NDV3 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SMC1BQ8NDV3 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
SMC1BQ8NDV3 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC20.27■□□□□ 0.84
SMC1BQ8NDV3 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
SMC1BQ8NDV3 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMC1BQ8NDV3 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMC1BQ8NDV3 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMC1BQ8NDV3 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMC1BQ8NDV3 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SMC1BQ8NDV3 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SMC1BQ8NDV3 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMC1BQ8NDV3 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC20.27■□□□□ 0.84
SMC1BQ8NDV3 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC20.27■□□□□ 0.84
SMC1BQ8NDV3 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SMC1BQ8NDV3 AC002558.1-201ENST00000488906 803 ntBASIC20.27■□□□□ 0.84
SMC1BQ8NDV3 GLI4-203ENST00000517468 963 ntTSL 5 BASIC20.27■□□□□ 0.84
SMC1BQ8NDV3 CD74-212ENST00000524315 584 ntTSL 5 BASIC20.27■□□□□ 0.84
SMC1BQ8NDV3 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC20.27■□□□□ 0.84
SMC1BQ8NDV3 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC20.27■□□□□ 0.84
SMC1BQ8NDV3 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.84
SMC1BQ8NDV3 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
SMC1BQ8NDV3 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC20.27■□□□□ 0.84
SMC1BQ8NDV3 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
SMC1BQ8NDV3 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SMC1BQ8NDV3 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SMC1BQ8NDV3 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SMC1BQ8NDV3 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMC1BQ8NDV3 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SMC1BQ8NDV3 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMC1BQ8NDV3 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMC1BQ8NDV3 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMC1BQ8NDV3 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMC1BQ8NDV3 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SMC1BQ8NDV3 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.26■□□□□ 0.83
SMC1BQ8NDV3 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMC1BQ8NDV3 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms