Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VRK3Q8IV63 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VRK3Q8IV63 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VRK3Q8IV63 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.84■□□□□ 0.29
VRK3Q8IV63 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VRK3Q8IV63 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VRK3Q8IV63 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VRK3Q8IV63 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.84■□□□□ 0.29
VRK3Q8IV63 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VRK3Q8IV63 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VRK3Q8IV63 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VRK3Q8IV63 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VRK3Q8IV63 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
VRK3Q8IV63 AC092068.3-201ENST00000587894 2016 ntBASIC16.84■□□□□ 0.29
VRK3Q8IV63 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.84■□□□□ 0.29
VRK3Q8IV63 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.84■□□□□ 0.29
VRK3Q8IV63 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VRK3Q8IV63 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.84■□□□□ 0.29
VRK3Q8IV63 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
VRK3Q8IV63 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.83■□□□□ 0.29
VRK3Q8IV63 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
VRK3Q8IV63 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
VRK3Q8IV63 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VRK3Q8IV63 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
VRK3Q8IV63 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VRK3Q8IV63 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VRK3Q8IV63 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VRK3Q8IV63 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VRK3Q8IV63 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
VRK3Q8IV63 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.83■□□□□ 0.28
VRK3Q8IV63 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VRK3Q8IV63 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VRK3Q8IV63 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.83■□□□□ 0.28
VRK3Q8IV63 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VRK3Q8IV63 AC073621.1-201ENST00000392730 636 ntBASIC16.83■□□□□ 0.28
VRK3Q8IV63 GPR89P-201ENST00000407924 1495 ntBASIC16.83■□□□□ 0.28
VRK3Q8IV63 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.83■□□□□ 0.28
VRK3Q8IV63 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VRK3Q8IV63 KRT18P27-201ENST00000427733 1299 ntBASIC16.83■□□□□ 0.28
VRK3Q8IV63 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VRK3Q8IV63 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.83■□□□□ 0.28
VRK3Q8IV63 FRMD8P1-201ENST00000440433 1524 ntBASIC16.83■□□□□ 0.28
VRK3Q8IV63 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
VRK3Q8IV63 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VRK3Q8IV63 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.83■□□□□ 0.28
VRK3Q8IV63 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.83■□□□□ 0.28
VRK3Q8IV63 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.83■□□□□ 0.28
VRK3Q8IV63 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.83■□□□□ 0.28
VRK3Q8IV63 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.83■□□□□ 0.28
VRK3Q8IV63 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC16.83■□□□□ 0.28
VRK3Q8IV63 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
VRK3Q8IV63 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.83■□□□□ 0.28
VRK3Q8IV63 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.83■□□□□ 0.28
VRK3Q8IV63 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.83■□□□□ 0.28
VRK3Q8IV63 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.83■□□□□ 0.28
VRK3Q8IV63 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VRK3Q8IV63 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VRK3Q8IV63 PCDHA12-202ENST00000613593 2588 ntBASIC16.83■□□□□ 0.28
VRK3Q8IV63 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
VRK3Q8IV63 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.82■□□□□ 0.28
VRK3Q8IV63 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.82■□□□□ 0.28
VRK3Q8IV63 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VRK3Q8IV63 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VRK3Q8IV63 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.82■□□□□ 0.28
VRK3Q8IV63 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VRK3Q8IV63 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.82■□□□□ 0.28
VRK3Q8IV63 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
VRK3Q8IV63 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VRK3Q8IV63 AP002414.3-201ENST00000589352 1468 ntBASIC16.82■□□□□ 0.28
VRK3Q8IV63 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VRK3Q8IV63 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VRK3Q8IV63 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.82■□□□□ 0.28
VRK3Q8IV63 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VRK3Q8IV63 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.82■□□□□ 0.28
VRK3Q8IV63 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.82■□□□□ 0.28
VRK3Q8IV63 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.82■□□□□ 0.28
VRK3Q8IV63 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.82■□□□□ 0.28
VRK3Q8IV63 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.82■□□□□ 0.28
VRK3Q8IV63 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.82■□□□□ 0.28
VRK3Q8IV63 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.82■□□□□ 0.28
VRK3Q8IV63 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.82■□□□□ 0.28
VRK3Q8IV63 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.82■□□□□ 0.28
VRK3Q8IV63 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
VRK3Q8IV63 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.82■□□□□ 0.28
VRK3Q8IV63 MIR7706-201ENST00000613747 67 ntBASIC16.82■□□□□ 0.28
VRK3Q8IV63 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.82■□□□□ 0.28
VRK3Q8IV63 AL773604.1-201ENST00000617417 272 ntBASIC16.82■□□□□ 0.28
VRK3Q8IV63 AC008735.5-201ENST00000623544 497 ntBASIC16.82■□□□□ 0.28
VRK3Q8IV63 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
VRK3Q8IV63 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.82■□□□□ 0.28
VRK3Q8IV63 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VRK3Q8IV63 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VRK3Q8IV63 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VRK3Q8IV63 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VRK3Q8IV63 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.82■□□□□ 0.28
VRK3Q8IV63 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
VRK3Q8IV63 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
VRK3Q8IV63 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VRK3Q8IV63 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VRK3Q8IV63 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms