Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 TPR-209ENST00000613151 2478 ntTSL 5 BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 AC112191.1-201ENST00000523689 701 ntBASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 AC093512.1-201ENST00000617969 520 ntBASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 GNE-204ENST00000539208 2190 ntTSL 2 BASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 AL133373.2-201ENST00000623187 2828 ntBASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHROOM1Q2M3G4 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 FAM58DP-201ENST00000428076 619 ntBASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 HLA-J-203ENST00000494367 1087 ntBASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHROOM1Q2M3G4 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 PNMT-202ENST00000394246 821 ntTSL 2 BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 AL627223.1-201ENST00000416693 442 ntBASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 AL671277.1-201ENST00000429656 993 ntBASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 AC023141.5-201ENST00000458585 616 ntBASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 DAD1-205ENST00000543337 501 ntTSL 3 BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 AC243562.1-201ENST00000560672 389 ntBASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 SLC22A20-204ENST00000530038 1673 ntBASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHROOM1Q2M3G4 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms