Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
FOXA3P55318 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC13□□□□□ -0.33
FOXA3P55318 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC13□□□□□ -0.33
FOXA3P55318 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC13□□□□□ -0.33
FOXA3P55318 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
FOXA3P55318 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC13□□□□□ -0.33
FOXA3P55318 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
FOXA3P55318 BX276092.7-203ENST00000637198 1536 ntBASIC13□□□□□ -0.33
FOXA3P55318 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
FOXA3P55318 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC13□□□□□ -0.33
FOXA3P55318 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
FOXA3P55318 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
FOXA3P55318 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
FOXA3P55318 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC13□□□□□ -0.33
FOXA3P55318 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC13□□□□□ -0.33
FOXA3P55318 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC13□□□□□ -0.33
FOXA3P55318 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC13□□□□□ -0.33
FOXA3P55318 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC13□□□□□ -0.33
FOXA3P55318 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 ETFA-216ENST00000560726 942 ntTSL 3 BASIC13□□□□□ -0.33
FOXA3P55318 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC13□□□□□ -0.33
FOXA3P55318 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 AC112497.1-201ENST00000624824 639 ntBASIC13□□□□□ -0.33
FOXA3P55318 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
FOXA3P55318 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC13□□□□□ -0.33
FOXA3P55318 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC13□□□□□ -0.33
FOXA3P55318 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC13□□□□□ -0.33
FOXA3P55318 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC12.99□□□□□ -0.33
FOXA3P55318 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
FOXA3P55318 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC12.99□□□□□ -0.33
FOXA3P55318 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC12.99□□□□□ -0.33
FOXA3P55318 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
FOXA3P55318 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC12.99□□□□□ -0.33
FOXA3P55318 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 ISG20-202ENST00000379224 540 ntTSL 3 BASIC12.99□□□□□ -0.33
FOXA3P55318 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC12.99□□□□□ -0.33
FOXA3P55318 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
FOXA3P55318 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 PARL-206ENST00000435888 1098 ntTSL 5 BASIC12.99□□□□□ -0.33
FOXA3P55318 GLI3-203ENST00000437480 451 ntTSL 2 BASIC12.99□□□□□ -0.33
FOXA3P55318 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 MFAP1P1-201ENST00000442257 1255 ntBASIC12.99□□□□□ -0.33
FOXA3P55318 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC12.99□□□□□ -0.33
FOXA3P55318 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
FOXA3P55318 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
FOXA3P55318 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC12.99□□□□□ -0.33
FOXA3P55318 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 AC093525.9-201ENST00000624961 1746 ntBASIC12.99□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms