Protein–RNA interactions for Protein: P51784

USP11, Ubiquitin carboxyl-terminal hydrolase 11, humanhuman

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP11P51784 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP11P51784 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC19.44■□□□□ 0.7
USP11P51784 AC004790.2-201ENST00000623588 572 ntBASIC19.44■□□□□ 0.7
USP11P51784 FRMD8P1-201ENST00000440433 1524 ntBASIC19.44■□□□□ 0.7
USP11P51784 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP11P51784 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP11P51784 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC19.44■□□□□ 0.7
USP11P51784 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP11P51784 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC19.44■□□□□ 0.7
USP11P51784 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP11P51784 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP11P51784 FZD10-202ENST00000539839 3282 ntBASIC19.43■□□□□ 0.7
USP11P51784 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
USP11P51784 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
USP11P51784 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP11P51784 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC19.43■□□□□ 0.7
USP11P51784 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC19.43■□□□□ 0.7
USP11P51784 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP11P51784 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP11P51784 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
USP11P51784 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP11P51784 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC19.43■□□□□ 0.7
USP11P51784 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP11P51784 AL022342.1-201ENST00000400363 863 ntBASIC19.43■□□□□ 0.7
USP11P51784 MRPL20P1-201ENST00000400819 433 ntBASIC19.43■□□□□ 0.7
USP11P51784 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC19.43■□□□□ 0.7
USP11P51784 LBH-204ENST00000406087 559 ntTSL 4 BASIC19.43■□□□□ 0.7
USP11P51784 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC19.43■□□□□ 0.7
USP11P51784 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC19.43■□□□□ 0.7
USP11P51784 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC19.43■□□□□ 0.7
USP11P51784 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC19.43■□□□□ 0.7
USP11P51784 TCAP-202ENST00000578283 583 ntTSL 5 BASIC19.43■□□□□ 0.7
USP11P51784 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
USP11P51784 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP11P51784 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP11P51784 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC19.43■□□□□ 0.7
USP11P51784 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP11P51784 EML3-212ENST00000494176 2901 ntTSL 2 BASIC19.43■□□□□ 0.7
USP11P51784 EML3-216ENST00000529309 2909 ntTSL 2 BASIC19.43■□□□□ 0.7
USP11P51784 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
USP11P51784 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP11P51784 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
USP11P51784 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP11P51784 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC19.42■□□□□ 0.7
USP11P51784 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
USP11P51784 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP11P51784 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP11P51784 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP11P51784 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC19.42■□□□□ 0.7
USP11P51784 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP11P51784 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
USP11P51784 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
USP11P51784 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC19.42■□□□□ 0.7
USP11P51784 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC19.42■□□□□ 0.7
USP11P51784 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC19.42■□□□□ 0.7
USP11P51784 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC19.42■□□□□ 0.7
USP11P51784 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC19.42■□□□□ 0.7
USP11P51784 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP11P51784 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP11P51784 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP11P51784 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
USP11P51784 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.42■□□□□ 0.7
USP11P51784 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP11P51784 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC19.42■□□□□ 0.7
USP11P51784 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC19.42■□□□□ 0.7
USP11P51784 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP11P51784 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP11P51784 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC19.41■□□□□ 0.7
USP11P51784 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP11P51784 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP11P51784 STX3-203ENST00000529177 1571 ntTSL 2 BASIC19.41■□□□□ 0.7
USP11P51784 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
USP11P51784 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP11P51784 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP11P51784 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP11P51784 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP11P51784 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP11P51784 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP11P51784 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP11P51784 AC087163.2-201ENST00000457299 853 ntBASIC19.41■□□□□ 0.7
USP11P51784 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
USP11P51784 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC19.41■□□□□ 0.7
USP11P51784 OR7E47P-204ENST00000575924 449 ntBASIC19.41■□□□□ 0.7
USP11P51784 PIN1-206ENST00000587625 878 ntTSL 2 BASIC19.41■□□□□ 0.7
USP11P51784 AC010654.1-201ENST00000615722 808 ntBASIC19.41■□□□□ 0.7
USP11P51784 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP11P51784 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP11P51784 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP11P51784 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP11P51784 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC19.41■□□□□ 0.7
USP11P51784 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP11P51784 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP11P51784 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC19.41■□□□□ 0.7
USP11P51784 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC19.41■□□□□ 0.7
USP11P51784 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP11P51784 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
USP11P51784 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP11P51784 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
USP11P51784 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC19.4■□□□□ 0.7
USP11P51784 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms