Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC19.13■□□□□ 0.65
HTTP42858 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
HTTP42858 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
HTTP42858 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
HTTP42858 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HTTP42858 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
HTTP42858 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HTTP42858 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HTTP42858 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HTTP42858 ZNF890P-202ENST00000530367 1156 ntBASIC19.13■□□□□ 0.65
HTTP42858 CHCHD2P3-201ENST00000603038 451 ntBASIC19.13■□□□□ 0.65
HTTP42858 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HTTP42858 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
HTTP42858 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
HTTP42858 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
HTTP42858 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC19.12■□□□□ 0.65
HTTP42858 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
HTTP42858 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
HTTP42858 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.12■□□□□ 0.65
HTTP42858 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HTTP42858 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HTTP42858 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HTTP42858 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.12■□□□□ 0.65
HTTP42858 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HTTP42858 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
HTTP42858 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC19.12■□□□□ 0.65
HTTP42858 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC19.12■□□□□ 0.65
HTTP42858 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
HTTP42858 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HTTP42858 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC19.12■□□□□ 0.65
HTTP42858 RNA5SP423-201ENST00000517127 109 ntBASIC19.12■□□□□ 0.65
HTTP42858 WNT11-204ENST00000621122 789 ntTSL 5 BASIC19.12■□□□□ 0.65
HTTP42858 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC19.12■□□□□ 0.65
HTTP42858 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
HTTP42858 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HTTP42858 AC087499.5-201ENST00000452760 1342 ntBASIC19.12■□□□□ 0.65
HTTP42858 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
HTTP42858 SLC22A20-204ENST00000530038 1673 ntBASIC19.12■□□□□ 0.65
HTTP42858 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HTTP42858 AC098614.1-201ENST00000368528 745 ntBASIC19.11■□□□□ 0.65
HTTP42858 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HTTP42858 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HTTP42858 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC19.11■□□□□ 0.65
HTTP42858 BANF1P1-201ENST00000553684 263 ntBASIC19.11■□□□□ 0.65
HTTP42858 AC027307.2-201ENST00000591252 911 ntBASIC19.11■□□□□ 0.65
HTTP42858 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HTTP42858 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
HTTP42858 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
HTTP42858 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC19.11■□□□□ 0.65
HTTP42858 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC19.11■□□□□ 0.65
HTTP42858 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HTTP42858 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC19.11■□□□□ 0.65
HTTP42858 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
HTTP42858 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC19.11■□□□□ 0.65
HTTP42858 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HTTP42858 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HTTP42858 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
HTTP42858 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
HTTP42858 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC19.11■□□□□ 0.65
HTTP42858 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC19.11■□□□□ 0.65
HTTP42858 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HTTP42858 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HTTP42858 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.1■□□□□ 0.65
HTTP42858 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HTTP42858 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HTTP42858 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.1■□□□□ 0.65
HTTP42858 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC19.1■□□□□ 0.65
HTTP42858 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC19.1■□□□□ 0.65
HTTP42858 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
HTTP42858 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
HTTP42858 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HTTP42858 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC19.1■□□□□ 0.65
HTTP42858 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC19.1■□□□□ 0.65
HTTP42858 BNIP3P42-201ENST00000454982 569 ntBASIC19.1■□□□□ 0.65
HTTP42858 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC19.1■□□□□ 0.65
HTTP42858 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC19.1■□□□□ 0.65
HTTP42858 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HTTP42858 BNIP3P29-201ENST00000598302 571 ntBASIC19.1■□□□□ 0.65
HTTP42858 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC19.1■□□□□ 0.65
HTTP42858 AC011447.5-201ENST00000616168 564 ntBASIC19.1■□□□□ 0.65
HTTP42858 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
HTTP42858 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
HTTP42858 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HTTP42858 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC19.1■□□□□ 0.65
HTTP42858 BTBD7P1-201ENST00000447253 1453 ntBASIC19.1■□□□□ 0.65
HTTP42858 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HTTP42858 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
HTTP42858 GNAQP1-201ENST00000444815 1067 ntBASIC19.1■□□□□ 0.65
HTTP42858 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HTTP42858 RARRES2P9-201ENST00000565168 469 ntBASIC19.1■□□□□ 0.65
HTTP42858 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HTTP42858 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.1■□□□□ 0.65
HTTP42858 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HTTP42858 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HTTP42858 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HTTP42858 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC19.1■□□□□ 0.65
HTTP42858 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HTTP42858 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
HTTP42858 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HTTP42858 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms