Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
BDNFP23560 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
BDNFP23560 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
BDNFP23560 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC18.14■□□□□ 0.49
BDNFP23560 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
BDNFP23560 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
BDNFP23560 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
BDNFP23560 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.14■□□□□ 0.49
BDNFP23560 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
BDNFP23560 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.14■□□□□ 0.49
BDNFP23560 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.14■□□□□ 0.49
BDNFP23560 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
BDNFP23560 PAWRP1-201ENST00000451083 565 ntBASIC18.14■□□□□ 0.49
BDNFP23560 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.14■□□□□ 0.49
BDNFP23560 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.14■□□□□ 0.49
BDNFP23560 AC018845.2-201ENST00000568326 409 ntBASIC18.14■□□□□ 0.49
BDNFP23560 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.14■□□□□ 0.49
BDNFP23560 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
BDNFP23560 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC18.14■□□□□ 0.49
BDNFP23560 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
BDNFP23560 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
BDNFP23560 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
BDNFP23560 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
BDNFP23560 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
BDNFP23560 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
BDNFP23560 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
BDNFP23560 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC18.13■□□□□ 0.49
BDNFP23560 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
BDNFP23560 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
BDNFP23560 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.13■□□□□ 0.49
BDNFP23560 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
BDNFP23560 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.13■□□□□ 0.49
BDNFP23560 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
BDNFP23560 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
BDNFP23560 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
BDNFP23560 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.13■□□□□ 0.49
BDNFP23560 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
BDNFP23560 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
BDNFP23560 IGLL3P-201ENST00000412472 434 ntBASIC18.13■□□□□ 0.49
BDNFP23560 BX842568.4-201ENST00000421222 227 ntBASIC18.13■□□□□ 0.49
BDNFP23560 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.13■□□□□ 0.49
BDNFP23560 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.13■□□□□ 0.49
BDNFP23560 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC18.13■□□□□ 0.49
BDNFP23560 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.13■□□□□ 0.49
BDNFP23560 AC040169.1-201ENST00000565382 521 ntBASIC18.13■□□□□ 0.49
BDNFP23560 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC18.13■□□□□ 0.49
BDNFP23560 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.13■□□□□ 0.49
BDNFP23560 CYB561-216ENST00000582297 897 ntTSL 3 BASIC18.13■□□□□ 0.49
BDNFP23560 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
BDNFP23560 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
BDNFP23560 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
BDNFP23560 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
BDNFP23560 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC18.13■□□□□ 0.49
BDNFP23560 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC18.13■□□□□ 0.49
BDNFP23560 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
BDNFP23560 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
BDNFP23560 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
BDNFP23560 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
BDNFP23560 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BDNFP23560 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
BDNFP23560 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BDNFP23560 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
BDNFP23560 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BDNFP23560 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
BDNFP23560 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BDNFP23560 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC18.12■□□□□ 0.49
BDNFP23560 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.12■□□□□ 0.49
BDNFP23560 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BDNFP23560 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BDNFP23560 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BDNFP23560 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.12■□□□□ 0.49
BDNFP23560 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BDNFP23560 CROCCP2-202ENST00000412962 2773 ntBASIC18.12■□□□□ 0.49
BDNFP23560 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
BDNFP23560 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BDNFP23560 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.12■□□□□ 0.49
BDNFP23560 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
BDNFP23560 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC18.12■□□□□ 0.49
BDNFP23560 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.12■□□□□ 0.49
BDNFP23560 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
BDNFP23560 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.12■□□□□ 0.49
BDNFP23560 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.12■□□□□ 0.49
BDNFP23560 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.12■□□□□ 0.49
BDNFP23560 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18.12■□□□□ 0.49
BDNFP23560 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BDNFP23560 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
BDNFP23560 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
BDNFP23560 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.12■□□□□ 0.49
BDNFP23560 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
BDNFP23560 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
BDNFP23560 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
BDNFP23560 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
BDNFP23560 HNRNPRP1-201ENST00000453465 1695 ntBASIC18.12■□□□□ 0.49
BDNFP23560 AC093525.9-201ENST00000624961 1746 ntBASIC18.12■□□□□ 0.49
BDNFP23560 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
BDNFP23560 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
BDNFP23560 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
BDNFP23560 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.11■□□□□ 0.49
BDNFP23560 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
BDNFP23560 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms