Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC018665.1-201ENST00000622927 1362 ntBASIC17.62■□□□□ 0.41
VCANP13611 SPDYE19P-201ENST00000338590 713 ntBASIC17.62■□□□□ 0.41
VCANP13611 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VCANP13611 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
VCANP13611 GGCT-203ENST00000409144 836 ntTSL 2 BASIC17.62■□□□□ 0.41
VCANP13611 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
VCANP13611 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.62■□□□□ 0.41
VCANP13611 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VCANP13611 AC133552.6-201ENST00000613406 534 ntBASIC17.62■□□□□ 0.41
VCANP13611 RPSAP52-203ENST00000622976 1023 ntBASIC17.62■□□□□ 0.41
VCANP13611 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VCANP13611 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.62■□□□□ 0.41
VCANP13611 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.62■□□□□ 0.41
VCANP13611 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
VCANP13611 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
VCANP13611 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC17.62■□□□□ 0.41
VCANP13611 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.62■□□□□ 0.41
VCANP13611 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VCANP13611 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VCANP13611 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VCANP13611 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VCANP13611 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.62■□□□□ 0.41
VCANP13611 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC17.62■□□□□ 0.41
VCANP13611 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC17.62■□□□□ 0.41
VCANP13611 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC17.62■□□□□ 0.41
VCANP13611 RN7SL219P-201ENST00000582872 296 ntBASIC17.62■□□□□ 0.41
VCANP13611 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC17.62■□□□□ 0.41
VCANP13611 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC17.62■□□□□ 0.41
VCANP13611 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VCANP13611 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
VCANP13611 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
VCANP13611 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VCANP13611 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VCANP13611 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VCANP13611 AC087499.5-201ENST00000452760 1342 ntBASIC17.62■□□□□ 0.41
VCANP13611 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.62■□□□□ 0.41
VCANP13611 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VCANP13611 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
VCANP13611 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
VCANP13611 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
VCANP13611 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC17.62■□□□□ 0.41
VCANP13611 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC17.62■□□□□ 0.41
VCANP13611 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
VCANP13611 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC17.62■□□□□ 0.41
VCANP13611 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.62■□□□□ 0.41
VCANP13611 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC17.62■□□□□ 0.41
VCANP13611 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC17.62■□□□□ 0.41
VCANP13611 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
VCANP13611 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
VCANP13611 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VCANP13611 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VCANP13611 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC17.61■□□□□ 0.41
VCANP13611 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
VCANP13611 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.61■□□□□ 0.41
VCANP13611 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.61■□□□□ 0.41
VCANP13611 SLC7A15P-201ENST00000424028 1363 ntBASIC17.61■□□□□ 0.41
VCANP13611 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VCANP13611 COX5BP2-201ENST00000392354 334 ntBASIC17.61■□□□□ 0.41
VCANP13611 STK25P1-201ENST00000585406 838 ntBASIC17.61■□□□□ 0.41
VCANP13611 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VCANP13611 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
VCANP13611 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.61■□□□□ 0.41
VCANP13611 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
VCANP13611 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VCANP13611 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VCANP13611 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.61■□□□□ 0.41
VCANP13611 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VCANP13611 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
VCANP13611 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VCANP13611 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC17.61■□□□□ 0.41
VCANP13611 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VCANP13611 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.61■□□□□ 0.41
VCANP13611 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VCANP13611 WASH6P-202ENST00000359512 1437 ntBASIC17.61■□□□□ 0.41
VCANP13611 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC17.61■□□□□ 0.41
VCANP13611 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VCANP13611 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
VCANP13611 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
VCANP13611 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
VCANP13611 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
VCANP13611 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCANP13611 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC17.6■□□□□ 0.41
VCANP13611 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VCANP13611 PDIA3P1-201ENST00000471856 1510 ntBASIC17.6■□□□□ 0.41
VCANP13611 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.6■□□□□ 0.41
VCANP13611 AL161938.1-201ENST00000569833 2180 ntBASIC17.6■□□□□ 0.41
VCANP13611 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VCANP13611 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCANP13611 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCANP13611 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCANP13611 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
VCANP13611 APOC3-202ENST00000375345 604 ntTSL 5 BASIC17.6■□□□□ 0.41
VCANP13611 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC17.6■□□□□ 0.41
VCANP13611 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VCANP13611 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VCANP13611 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC17.6■□□□□ 0.41
VCANP13611 AC093004.1-201ENST00000508850 424 ntBASIC17.6■□□□□ 0.41
VCANP13611 AC104989.1-201ENST00000519711 778 ntBASIC17.6■□□□□ 0.41
VCANP13611 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC17.6■□□□□ 0.41
VCANP13611 AC107918.2-201ENST00000530817 355 ntBASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms