Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.48■□□□□ 0.39
HOXC11O43248 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
HOXC11O43248 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.48■□□□□ 0.39
HOXC11O43248 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HOXC11O43248 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HOXC11O43248 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HOXC11O43248 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.47■□□□□ 0.39
HOXC11O43248 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
HOXC11O43248 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
HOXC11O43248 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
HOXC11O43248 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.47■□□□□ 0.39
HOXC11O43248 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC11O43248 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC11O43248 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC11O43248 AL121761.2-201ENST00000598007 1648 ntBASIC17.47■□□□□ 0.39
HOXC11O43248 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC11O43248 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.47■□□□□ 0.39
HOXC11O43248 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.47■□□□□ 0.39
HOXC11O43248 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.47■□□□□ 0.39
HOXC11O43248 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC11O43248 AC018470.1-201ENST00000624790 3129 ntBASIC17.47■□□□□ 0.39
HOXC11O43248 AC002056.1-201ENST00000395613 760 ntBASIC17.47■□□□□ 0.39
HOXC11O43248 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC11O43248 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.47■□□□□ 0.39
HOXC11O43248 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.47■□□□□ 0.39
HOXC11O43248 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC17.47■□□□□ 0.39
HOXC11O43248 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.47■□□□□ 0.39
HOXC11O43248 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.47■□□□□ 0.39
HOXC11O43248 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.47■□□□□ 0.39
HOXC11O43248 AC105339.1-204ENST00000636249 355 ntBASIC17.47■□□□□ 0.39
HOXC11O43248 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.47■□□□□ 0.39
HOXC11O43248 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC11O43248 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC11O43248 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC11O43248 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC11O43248 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.47■□□□□ 0.39
HOXC11O43248 AC008764.6-201ENST00000595909 2069 ntBASIC17.47■□□□□ 0.39
HOXC11O43248 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC11O43248 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC11O43248 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC11O43248 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC11O43248 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC11O43248 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.47■□□□□ 0.39
HOXC11O43248 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC11O43248 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC11O43248 AL390961.4-201ENST00000623958 2535 ntBASIC17.47■□□□□ 0.39
HOXC11O43248 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC11O43248 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC11O43248 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC11O43248 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC11O43248 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC11O43248 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
HOXC11O43248 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC11O43248 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC11O43248 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC11O43248 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.46■□□□□ 0.39
HOXC11O43248 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.46■□□□□ 0.39
HOXC11O43248 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.46■□□□□ 0.39
HOXC11O43248 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
HOXC11O43248 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC11O43248 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.46■□□□□ 0.39
HOXC11O43248 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC11O43248 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC11O43248 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC11O43248 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC11O43248 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC11O43248 ADH5P3-201ENST00000433842 1137 ntBASIC17.46■□□□□ 0.39
HOXC11O43248 AC140658.5-201ENST00000438532 169 ntBASIC17.46■□□□□ 0.39
HOXC11O43248 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC11O43248 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.46■□□□□ 0.39
HOXC11O43248 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC11O43248 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.46■□□□□ 0.39
HOXC11O43248 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17.46■□□□□ 0.39
HOXC11O43248 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
HOXC11O43248 AC004835.2-201ENST00000603762 682 ntBASIC17.46■□□□□ 0.39
HOXC11O43248 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC17.46■□□□□ 0.39
HOXC11O43248 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC11O43248 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC11O43248 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.46■□□□□ 0.39
HOXC11O43248 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
HOXC11O43248 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC11O43248 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.46■□□□□ 0.39
HOXC11O43248 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC11O43248 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.46■□□□□ 0.39
HOXC11O43248 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC11O43248 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC11O43248 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
HOXC11O43248 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
HOXC11O43248 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.46■□□□□ 0.39
HOXC11O43248 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.38
HOXC11O43248 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.38
HOXC11O43248 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.45■□□□□ 0.38
HOXC11O43248 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.45■□□□□ 0.38
HOXC11O43248 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.45■□□□□ 0.38
HOXC11O43248 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC11O43248 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC11O43248 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.45■□□□□ 0.38
HOXC11O43248 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC11O43248 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC11O43248 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms