Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC9.57□□□□□ -0.88
CHKB-CPT1BH3BT56 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC9.57□□□□□ -0.88
CHKB-CPT1BH3BT56 HECW1-201ENST00000395891 9501 ntAPPRIS P3 TSL 1 (best) BASIC9.57□□□□□ -0.88
CHKB-CPT1BH3BT56 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
CHKB-CPT1BH3BT56 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC9.57□□□□□ -0.88
CHKB-CPT1BH3BT56 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC9.57□□□□□ -0.88
CHKB-CPT1BH3BT56 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
CHKB-CPT1BH3BT56 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC9.57□□□□□ -0.88
CHKB-CPT1BH3BT56 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC9.57□□□□□ -0.88
CHKB-CPT1BH3BT56 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC9.57□□□□□ -0.88
CHKB-CPT1BH3BT56 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC9.57□□□□□ -0.88
CHKB-CPT1BH3BT56 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC9.57□□□□□ -0.88
CHKB-CPT1BH3BT56 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC9.57□□□□□ -0.88
CHKB-CPT1BH3BT56 KLB-201ENST00000257408 6082 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
CHKB-CPT1BH3BT56 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
CHKB-CPT1BH3BT56 GRM4-202ENST00000374181 7275 ntTSL 5 BASIC9.57□□□□□ -0.88
CHKB-CPT1BH3BT56 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
CHKB-CPT1BH3BT56 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 SEMA6A-202ENST00000343348 6878 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 PUM2-203ENST00000361078 6251 ntTSL 2 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 HDGFL3-201ENST00000299633 12733 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 ANKRD17-202ENST00000358602 10784 ntAPPRIS P4 TSL 5 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 HSPA12A-201ENST00000369209 5722 ntAPPRIS P3 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 SAPCD2P1-201ENST00000395413 1184 ntBASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 AC105233.4-201ENST00000642045 216 ntBASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 TNRC6C-201ENST00000301624 9632 ntAPPRIS ALT2 TSL 5 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 LMCD1-201ENST00000157600 8405 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 TP73-206ENST00000378288 5120 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 SPG11-201ENST00000261866 7774 ntAPPRIS P3 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
CHKB-CPT1BH3BT56 PLEKHG3-201ENST00000247226 10351 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
CHKB-CPT1BH3BT56 AC006449.5-201ENST00000610658 2098 ntBASIC9.55□□□□□ -0.88
CHKB-CPT1BH3BT56 VAMP4-201ENST00000236192 5159 ntAPPRIS P3 TSL 1 (best) BASIC9.55□□□□□ -0.88
CHKB-CPT1BH3BT56 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
CHKB-CPT1BH3BT56 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
CHKB-CPT1BH3BT56 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC9.55□□□□□ -0.88
CHKB-CPT1BH3BT56 PER3-202ENST00000377532 6279 ntAPPRIS ALT2 TSL 1 (best) BASIC9.55□□□□□ -0.88
CHKB-CPT1BH3BT56 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC9.55□□□□□ -0.88
CHKB-CPT1BH3BT56 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC9.55□□□□□ -0.88
CHKB-CPT1BH3BT56 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC9.55□□□□□ -0.88
CHKB-CPT1BH3BT56 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
CHKB-CPT1BH3BT56 RAPGEF6-207ENST00000507093 5742 ntAPPRIS ALT1 TSL 1 (best) BASIC9.55□□□□□ -0.88
CHKB-CPT1BH3BT56 STK4-201ENST00000372801 2038 ntTSL 2 BASIC9.55□□□□□ -0.88
CHKB-CPT1BH3BT56 TOR1AIP1-212ENST00000606911 8704 ntAPPRIS P3 TSL 1 (best) BASIC9.55□□□□□ -0.88
CHKB-CPT1BH3BT56 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC9.55□□□□□ -0.88
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms