Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.47■□□□□ 0.55
SNX9Q9Y5X1 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.47■□□□□ 0.55
SNX9Q9Y5X1 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.47■□□□□ 0.55
SNX9Q9Y5X1 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
SNX9Q9Y5X1 AL805961.1-202ENST00000641562 540 ntBASIC18.47■□□□□ 0.55
SNX9Q9Y5X1 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SNX9Q9Y5X1 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SNX9Q9Y5X1 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SNX9Q9Y5X1 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC18.47■□□□□ 0.55
SNX9Q9Y5X1 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SNX9Q9Y5X1 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.47■□□□□ 0.55
SNX9Q9Y5X1 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.47■□□□□ 0.55
SNX9Q9Y5X1 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
SNX9Q9Y5X1 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.47■□□□□ 0.55
SNX9Q9Y5X1 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC18.47■□□□□ 0.55
SNX9Q9Y5X1 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SNX9Q9Y5X1 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SNX9Q9Y5X1 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.47■□□□□ 0.55
SNX9Q9Y5X1 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 AC009947.1-201ENST00000444350 727 ntBASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 AC034105.1-201ENST00000563488 319 ntBASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 PKD1P1-201ENST00000458669 6805 ntBASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.46■□□□□ 0.55
SNX9Q9Y5X1 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.54
SNX9Q9Y5X1 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
SNX9Q9Y5X1 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 AC108751.1-201ENST00000490852 363 ntBASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 AC008667.4-201ENST00000607370 168 ntBASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SNX9Q9Y5X1 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SNX9Q9Y5X1 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SNX9Q9Y5X1 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
SNX9Q9Y5X1 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SNX9Q9Y5X1 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC18.44■□□□□ 0.54
SNX9Q9Y5X1 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
SNX9Q9Y5X1 PI4KAP1-204ENST00000612579 1703 ntBASIC18.44■□□□□ 0.54
SNX9Q9Y5X1 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC18.44■□□□□ 0.54
SNX9Q9Y5X1 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
SNX9Q9Y5X1 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.44■□□□□ 0.54
SNX9Q9Y5X1 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SNX9Q9Y5X1 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SNX9Q9Y5X1 AP002414.1-201ENST00000391405 1147 ntBASIC18.44■□□□□ 0.54
SNX9Q9Y5X1 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SNX9Q9Y5X1 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms