Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDH9Q9ULB4 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CDH9Q9ULB4 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC18.2■□□□□ 0.5
CDH9Q9ULB4 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDH9Q9ULB4 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDH9Q9ULB4 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 IGLL3P-201ENST00000412472 434 ntBASIC18.19■□□□□ 0.5
CDH9Q9ULB4 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 KRT18P2-201ENST00000447938 1258 ntBASIC18.19■□□□□ 0.5
CDH9Q9ULB4 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 CD63-210ENST00000550776 870 ntTSL 5 BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 AC040169.1-201ENST00000565382 521 ntBASIC18.19■□□□□ 0.5
CDH9Q9ULB4 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 AC023511.2-201ENST00000618803 211 ntBASIC18.19■□□□□ 0.5
CDH9Q9ULB4 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CDH9Q9ULB4 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 CROCCP2-202ENST00000412962 2773 ntBASIC18.18■□□□□ 0.5
CDH9Q9ULB4 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 SLC25A6P2-201ENST00000497974 877 ntBASIC18.18■□□□□ 0.5
CDH9Q9ULB4 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH9Q9ULB4 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 HNRNPA1P28-201ENST00000424481 961 ntBASIC18.17■□□□□ 0.5
CDH9Q9ULB4 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 AC096734.2-201ENST00000562054 433 ntBASIC18.17■□□□□ 0.5
CDH9Q9ULB4 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
CDH9Q9ULB4 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms