Protein–RNA interactions for Protein: Q9UBN7

HDAC6, Histone deacetylase 6, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6Q9UBN7 GGCT-205ENST00000409436 954 ntTSL 3 BASIC19.52■□□□□ 0.72
HDAC6Q9UBN7 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
HDAC6Q9UBN7 AC004967.1-201ENST00000453589 447 ntBASIC19.52■□□□□ 0.72
HDAC6Q9UBN7 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC19.52■□□□□ 0.72
HDAC6Q9UBN7 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HDAC6Q9UBN7 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC19.52■□□□□ 0.72
HDAC6Q9UBN7 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC19.52■□□□□ 0.72
HDAC6Q9UBN7 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC19.52■□□□□ 0.72
HDAC6Q9UBN7 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
HDAC6Q9UBN7 AC019129.2-201ENST00000609837 1235 ntBASIC19.52■□□□□ 0.72
HDAC6Q9UBN7 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC19.52■□□□□ 0.72
HDAC6Q9UBN7 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
HDAC6Q9UBN7 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.72
HDAC6Q9UBN7 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.52■□□□□ 0.72
HDAC6Q9UBN7 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.52■□□□□ 0.72
HDAC6Q9UBN7 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC19.52■□□□□ 0.72
HDAC6Q9UBN7 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HDAC6Q9UBN7 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
HDAC6Q9UBN7 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HDAC6Q9UBN7 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
HDAC6Q9UBN7 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
HDAC6Q9UBN7 HLA-DQB1-201ENST00000374943 1656 ntBASIC19.52■□□□□ 0.71
HDAC6Q9UBN7 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
HDAC6Q9UBN7 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 KLF4P1-201ENST00000412782 1185 ntBASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 ARTN-206ENST00000472435 402 ntTSL 3 BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 TCAP-202ENST00000578283 583 ntTSL 5 BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 MTDHP5-201ENST00000598980 586 ntBASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC6Q9UBN7 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 HTR7P1-202ENST00000624664 4411 ntBASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 COA5-202ENST00000409997 557 ntTSL 4 BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 AC109462.3-201ENST00000573934 613 ntBASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 NCF1C-201ENST00000438382 1427 ntBASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HDAC6Q9UBN7 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HDAC6Q9UBN7 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
HDAC6Q9UBN7 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC19.49■□□□□ 0.71
HDAC6Q9UBN7 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
HDAC6Q9UBN7 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC19.49■□□□□ 0.71
HDAC6Q9UBN7 AC003669.1-201ENST00000334569 611 ntBASIC19.49■□□□□ 0.71
HDAC6Q9UBN7 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms