Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CISHQ9NSE2 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.4■□□□□ 0.54
CISHQ9NSE2 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.4■□□□□ 0.54
CISHQ9NSE2 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.4■□□□□ 0.54
CISHQ9NSE2 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC18.4■□□□□ 0.54
CISHQ9NSE2 AC092053.1-201ENST00000605787 1936 ntBASIC18.4■□□□□ 0.54
CISHQ9NSE2 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CISHQ9NSE2 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CISHQ9NSE2 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CISHQ9NSE2 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
CISHQ9NSE2 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CISHQ9NSE2 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CISHQ9NSE2 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CISHQ9NSE2 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.4■□□□□ 0.54
CISHQ9NSE2 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CISHQ9NSE2 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CISHQ9NSE2 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CISHQ9NSE2 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CISHQ9NSE2 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CISHQ9NSE2 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CISHQ9NSE2 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CISHQ9NSE2 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CISHQ9NSE2 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.39■□□□□ 0.54
CISHQ9NSE2 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
CISHQ9NSE2 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CISHQ9NSE2 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CISHQ9NSE2 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
CISHQ9NSE2 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.39■□□□□ 0.53
CISHQ9NSE2 AC009078.2-202ENST00000463353 338 ntBASIC18.39■□□□□ 0.53
CISHQ9NSE2 PPIE-208ENST00000470213 927 ntTSL 3 BASIC18.39■□□□□ 0.53
CISHQ9NSE2 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.39■□□□□ 0.53
CISHQ9NSE2 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.39■□□□□ 0.53
CISHQ9NSE2 AC006557.2-201ENST00000592985 1240 ntBASIC18.39■□□□□ 0.53
CISHQ9NSE2 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.39■□□□□ 0.53
CISHQ9NSE2 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.39■□□□□ 0.53
CISHQ9NSE2 LTB4R2-202ENST00000528054 3092 ntBASIC18.39■□□□□ 0.53
CISHQ9NSE2 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CISHQ9NSE2 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC18.39■□□□□ 0.53
CISHQ9NSE2 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CISHQ9NSE2 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CISHQ9NSE2 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
CISHQ9NSE2 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC18.39■□□□□ 0.53
CISHQ9NSE2 GPR89P-201ENST00000407924 1495 ntBASIC18.39■□□□□ 0.53
CISHQ9NSE2 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CISHQ9NSE2 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CISHQ9NSE2 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.38■□□□□ 0.53
CISHQ9NSE2 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CISHQ9NSE2 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.38■□□□□ 0.53
CISHQ9NSE2 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CISHQ9NSE2 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC18.38■□□□□ 0.53
CISHQ9NSE2 AC080080.1-201ENST00000625121 2420 ntBASIC18.38■□□□□ 0.53
CISHQ9NSE2 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CISHQ9NSE2 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.38■□□□□ 0.53
CISHQ9NSE2 KRT18P27-201ENST00000427733 1299 ntBASIC18.38■□□□□ 0.53
CISHQ9NSE2 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC18.38■□□□□ 0.53
CISHQ9NSE2 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.38■□□□□ 0.53
CISHQ9NSE2 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC18.38■□□□□ 0.53
CISHQ9NSE2 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.38■□□□□ 0.53
CISHQ9NSE2 SLC25A6P4-201ENST00000586535 553 ntBASIC18.38■□□□□ 0.53
CISHQ9NSE2 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.38■□□□□ 0.53
CISHQ9NSE2 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC18.38■□□□□ 0.53
CISHQ9NSE2 AL773604.1-201ENST00000617417 272 ntBASIC18.38■□□□□ 0.53
CISHQ9NSE2 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
CISHQ9NSE2 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CISHQ9NSE2 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CISHQ9NSE2 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CISHQ9NSE2 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC18.38■□□□□ 0.53
CISHQ9NSE2 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CISHQ9NSE2 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CISHQ9NSE2 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CISHQ9NSE2 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CISHQ9NSE2 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.38■□□□□ 0.53
CISHQ9NSE2 AC006504.4-201ENST00000592118 1568 ntBASIC18.38■□□□□ 0.53
CISHQ9NSE2 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CISHQ9NSE2 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CISHQ9NSE2 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.38■□□□□ 0.53
CISHQ9NSE2 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CISHQ9NSE2 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC18.37■□□□□ 0.53
CISHQ9NSE2 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.37■□□□□ 0.53
CISHQ9NSE2 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CISHQ9NSE2 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.37■□□□□ 0.53
CISHQ9NSE2 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CISHQ9NSE2 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.37■□□□□ 0.53
CISHQ9NSE2 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CISHQ9NSE2 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC18.37■□□□□ 0.53
CISHQ9NSE2 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.37■□□□□ 0.53
CISHQ9NSE2 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CISHQ9NSE2 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CISHQ9NSE2 ELK2BP-201ENST00000415014 1224 ntBASIC18.37■□□□□ 0.53
CISHQ9NSE2 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CISHQ9NSE2 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CISHQ9NSE2 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CISHQ9NSE2 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC18.37■□□□□ 0.53
CISHQ9NSE2 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.37■□□□□ 0.53
CISHQ9NSE2 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.37■□□□□ 0.53
CISHQ9NSE2 AC012640.2-201ENST00000561606 901 ntBASIC18.37■□□□□ 0.53
CISHQ9NSE2 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.37■□□□□ 0.53
CISHQ9NSE2 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC18.37■□□□□ 0.53
CISHQ9NSE2 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.37■□□□□ 0.53
CISHQ9NSE2 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms