Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 LINC00982-205ENST00000420957 435 ntBASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 ACTG1P4-201ENST00000425123 1122 ntBASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 MIR7706-201ENST00000613747 67 ntBASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.14■□□□□ 0.33
TRIM39Q9HCM9 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 AC012640.2-201ENST00000561606 901 ntBASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 AC116407.3-201ENST00000623905 1129 ntBASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM39Q9HCM9 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 AC011270.2-201ENST00000624293 2550 ntBASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 KRT18P27-201ENST00000427733 1299 ntBASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms