Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MMP28Q9H239 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
MMP28Q9H239 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MMP28Q9H239 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
MMP28Q9H239 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MMP28Q9H239 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
MMP28Q9H239 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC15.3■□□□□ 0.04
MMP28Q9H239 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MMP28Q9H239 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MMP28Q9H239 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MMP28Q9H239 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MMP28Q9H239 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MMP28Q9H239 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC15.3■□□□□ 0.04
MMP28Q9H239 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MMP28Q9H239 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
MMP28Q9H239 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
MMP28Q9H239 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
MMP28Q9H239 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC15.3■□□□□ 0.04
MMP28Q9H239 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC15.3■□□□□ 0.04
MMP28Q9H239 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MMP28Q9H239 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC15.3■□□□□ 0.04
MMP28Q9H239 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC15.3■□□□□ 0.04
MMP28Q9H239 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC15.3■□□□□ 0.04
MMP28Q9H239 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
MMP28Q9H239 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MMP28Q9H239 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC15.3■□□□□ 0.04
MMP28Q9H239 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC15.3■□□□□ 0.04
MMP28Q9H239 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC15.3■□□□□ 0.04
MMP28Q9H239 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
MMP28Q9H239 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
MMP28Q9H239 KRT8P9-201ENST00000558927 1449 ntBASIC15.3■□□□□ 0.04
MMP28Q9H239 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC15.3■□□□□ 0.04
MMP28Q9H239 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MMP28Q9H239 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MMP28Q9H239 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.3■□□□□ 0.04
MMP28Q9H239 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
MMP28Q9H239 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
MMP28Q9H239 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
MMP28Q9H239 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
MMP28Q9H239 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
MMP28Q9H239 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
MMP28Q9H239 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC15.29■□□□□ 0.04
MMP28Q9H239 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
MMP28Q9H239 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC15.29■□□□□ 0.04
MMP28Q9H239 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC15.29■□□□□ 0.04
MMP28Q9H239 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC15.29■□□□□ 0.04
MMP28Q9H239 TSPY14P-201ENST00000303979 915 ntBASIC15.29■□□□□ 0.04
MMP28Q9H239 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC15.29■□□□□ 0.04
MMP28Q9H239 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC15.29■□□□□ 0.04
MMP28Q9H239 MCCD1P1-208ENST00000445732 328 ntBASIC15.29■□□□□ 0.04
MMP28Q9H239 EGLN1P1-201ENST00000531623 762 ntBASIC15.29■□□□□ 0.04
MMP28Q9H239 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
MMP28Q9H239 AL353719.1-201ENST00000566847 864 ntBASIC15.29■□□□□ 0.04
MMP28Q9H239 AL023803.3-201ENST00000615559 522 ntBASIC15.29■□□□□ 0.04
MMP28Q9H239 AC008622.2-201ENST00000617006 1229 ntBASIC15.29■□□□□ 0.04
MMP28Q9H239 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
MMP28Q9H239 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
MMP28Q9H239 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MMP28Q9H239 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MMP28Q9H239 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
MMP28Q9H239 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MMP28Q9H239 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
MMP28Q9H239 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.29■□□□□ 0.04
MMP28Q9H239 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MMP28Q9H239 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC15.29■□□□□ 0.04
MMP28Q9H239 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC15.29■□□□□ 0.04
MMP28Q9H239 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.29■□□□□ 0.04
MMP28Q9H239 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MMP28Q9H239 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
MMP28Q9H239 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC15.29■□□□□ 0.04
MMP28Q9H239 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MMP28Q9H239 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
MMP28Q9H239 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.28■□□□□ 0.04
MMP28Q9H239 AL109659.2-201ENST00000606809 1674 ntBASIC15.28■□□□□ 0.04
MMP28Q9H239 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MMP28Q9H239 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MMP28Q9H239 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MMP28Q9H239 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.28■□□□□ 0.04
MMP28Q9H239 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MMP28Q9H239 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MMP28Q9H239 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
MMP28Q9H239 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
MMP28Q9H239 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
MMP28Q9H239 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
MMP28Q9H239 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
MMP28Q9H239 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.28■□□□□ 0.04
MMP28Q9H239 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MMP28Q9H239 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MMP28Q9H239 AP000593.1-201ENST00000393668 712 ntBASIC15.28■□□□□ 0.04
MMP28Q9H239 AC128688.1-201ENST00000487626 519 ntBASIC15.28■□□□□ 0.04
MMP28Q9H239 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC15.28■□□□□ 0.04
MMP28Q9H239 AC145285.6-201ENST00000604632 637 ntBASIC15.28■□□□□ 0.04
MMP28Q9H239 AL445228.2-201ENST00000605589 952 ntBASIC15.28■□□□□ 0.04
MMP28Q9H239 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC15.28■□□□□ 0.04
MMP28Q9H239 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MMP28Q9H239 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC15.28■□□□□ 0.04
MMP28Q9H239 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC15.28■□□□□ 0.04
MMP28Q9H239 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
MMP28Q9H239 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
MMP28Q9H239 AC116353.5-201ENST00000638148 1699 ntBASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms