Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.92■□□□□ 0.62
TRAIPQ9BWF2 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.92■□□□□ 0.62
TRAIPQ9BWF2 GGTLC5P-201ENST00000617623 998 ntBASIC18.92■□□□□ 0.62
TRAIPQ9BWF2 AC055717.3-201ENST00000622967 595 ntBASIC18.92■□□□□ 0.62
TRAIPQ9BWF2 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TRAIPQ9BWF2 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRAIPQ9BWF2 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.92■□□□□ 0.62
TRAIPQ9BWF2 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
TRAIPQ9BWF2 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRAIPQ9BWF2 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRAIPQ9BWF2 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 AC092183.1-201ENST00000469884 875 ntBASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 MIR3687-2-201ENST00000577708 61 ntBASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 AC010327.4-202ENST00000591484 748 ntBASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 MIR3687-1-201ENST00000614492 61 ntBASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 AC002310.6-201ENST00000624451 1377 ntBASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRAIPQ9BWF2 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 PTCHD3P3-201ENST00000403073 906 ntBASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 COA5-202ENST00000409997 557 ntTSL 4 BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 AC010654.1-201ENST00000615722 808 ntBASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 AC004790.2-201ENST00000623588 572 ntBASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 AMT-250ENST00000637682 1823 ntTSL 5 BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC18.9■□□□□ 0.62
TRAIPQ9BWF2 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
TRAIPQ9BWF2 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRAIPQ9BWF2 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRAIPQ9BWF2 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRAIPQ9BWF2 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
TRAIPQ9BWF2 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRAIPQ9BWF2 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms