Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 AL022326.1-202ENST00000641533 845 ntBASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 AL354751.1-201ENST00000412768 1863 ntBASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 MIR574-201ENST00000385209 96 ntBASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 KRT18P58-201ENST00000527480 1120 ntBASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 AC106730.1-201ENST00000566722 1090 ntBASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CLIP3Q96DZ5 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
CLIP3Q96DZ5 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
CLIP3Q96DZ5 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
CLIP3Q96DZ5 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
CLIP3Q96DZ5 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 BX276092.7-203ENST00000637198 1536 ntBASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 AC138028.4-201ENST00000564984 1845 ntBASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 AC009949.1-201ENST00000623048 1830 ntBASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 MIR940-201ENST00000401276 94 ntBASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 AC008735.5-201ENST00000623544 497 ntBASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 AC107918.4-202ENST00000641623 219 ntBASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 AC004817.3-201ENST00000602957 2129 ntBASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms