Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
DEPDC4Q8N2C3 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
DEPDC4Q8N2C3 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
DEPDC4Q8N2C3 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.14■□□□□ 0.17
DEPDC4Q8N2C3 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 LINC00167-201ENST00000530583 1419 ntBASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 PCED1CP-201ENST00000419887 785 ntBASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 UPK3BP1-201ENST00000428678 509 ntBASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 AC010240.3-201ENST00000607688 395 ntBASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 IER3-202ENST00000376377 1350 ntBASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
DEPDC4Q8N2C3 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 RASA4DP-201ENST00000460726 1199 ntBASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 LY6E-213ENST00000522528 606 ntTSL 3 BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 ZNF444P1-201ENST00000559497 298 ntBASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
DEPDC4Q8N2C3 AL603756.1-201ENST00000606511 2163 ntBASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms