Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 HES2-206ENST00000489730 730 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 RAP2CP1-201ENST00000605103 478 ntBASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 WT1-AS_3.1-201ENST00000613262 234 ntBASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 CRK-204ENST00000574295 1391 ntTSL 5 BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 KRT18P55-202ENST00000578578 1546 ntBASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 MFF-205ENST00000354503 1085 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 YBX1P10-201ENST00000444752 975 ntBASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
CCDC28AQ8IWP9 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC14.46□□□□□ -0.1
CCDC28AQ8IWP9 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC14.46□□□□□ -0.1
CCDC28AQ8IWP9 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC28AQ8IWP9 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.1
CCDC28AQ8IWP9 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC28AQ8IWP9 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC14.46□□□□□ -0.1
CCDC28AQ8IWP9 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC14.46□□□□□ -0.1
CCDC28AQ8IWP9 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC28AQ8IWP9 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC28AQ8IWP9 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 NCF1B-203ENST00000435988 1254 ntBASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 TK2-208ENST00000545043 1120 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms