Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 TPM4P1-201ENST00000436100 807 ntBASIC16.87■□□□□ 0.29
VRK3Q8IV63 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.87■□□□□ 0.29
VRK3Q8IV63 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.87■□□□□ 0.29
VRK3Q8IV63 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.87■□□□□ 0.29
VRK3Q8IV63 AC012640.2-201ENST00000561606 901 ntBASIC16.87■□□□□ 0.29
VRK3Q8IV63 AC139887.3-201ENST00000568585 713 ntBASIC16.87■□□□□ 0.29
VRK3Q8IV63 AL139424.1-201ENST00000607572 797 ntBASIC16.87■□□□□ 0.29
VRK3Q8IV63 AC004706.3-202ENST00000621574 984 ntBASIC16.87■□□□□ 0.29
VRK3Q8IV63 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VRK3Q8IV63 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VRK3Q8IV63 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VRK3Q8IV63 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VRK3Q8IV63 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
VRK3Q8IV63 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VRK3Q8IV63 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VRK3Q8IV63 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VRK3Q8IV63 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VRK3Q8IV63 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
VRK3Q8IV63 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.87■□□□□ 0.29
VRK3Q8IV63 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VRK3Q8IV63 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VRK3Q8IV63 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VRK3Q8IV63 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
VRK3Q8IV63 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VRK3Q8IV63 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
VRK3Q8IV63 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VRK3Q8IV63 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.86■□□□□ 0.29
VRK3Q8IV63 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VRK3Q8IV63 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VRK3Q8IV63 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VRK3Q8IV63 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VRK3Q8IV63 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VRK3Q8IV63 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
VRK3Q8IV63 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.86■□□□□ 0.29
VRK3Q8IV63 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VRK3Q8IV63 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC16.86■□□□□ 0.29
VRK3Q8IV63 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.86■□□□□ 0.29
VRK3Q8IV63 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
VRK3Q8IV63 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.86■□□□□ 0.29
VRK3Q8IV63 OR7E14P-202ENST00000530490 1290 ntBASIC16.86■□□□□ 0.29
VRK3Q8IV63 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.86■□□□□ 0.29
VRK3Q8IV63 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.86■□□□□ 0.29
VRK3Q8IV63 CBFB-203ENST00000561924 584 ntTSL 5 BASIC16.86■□□□□ 0.29
VRK3Q8IV63 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.86■□□□□ 0.29
VRK3Q8IV63 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.86■□□□□ 0.29
VRK3Q8IV63 AL049840.3-201ENST00000602669 611 ntBASIC16.86■□□□□ 0.29
VRK3Q8IV63 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
VRK3Q8IV63 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
VRK3Q8IV63 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VRK3Q8IV63 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VRK3Q8IV63 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.86■□□□□ 0.29
VRK3Q8IV63 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VRK3Q8IV63 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
VRK3Q8IV63 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VRK3Q8IV63 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VRK3Q8IV63 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
VRK3Q8IV63 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VRK3Q8IV63 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VRK3Q8IV63 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VRK3Q8IV63 AC006504.4-201ENST00000592118 1568 ntBASIC16.85■□□□□ 0.29
VRK3Q8IV63 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VRK3Q8IV63 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VRK3Q8IV63 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VRK3Q8IV63 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VRK3Q8IV63 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VRK3Q8IV63 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.85■□□□□ 0.29
VRK3Q8IV63 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
VRK3Q8IV63 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
VRK3Q8IV63 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.85■□□□□ 0.29
VRK3Q8IV63 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
VRK3Q8IV63 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VRK3Q8IV63 ELK2BP-201ENST00000415014 1224 ntBASIC16.85■□□□□ 0.29
VRK3Q8IV63 LAGE3P1-201ENST00000425356 484 ntBASIC16.85■□□□□ 0.29
VRK3Q8IV63 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.85■□□□□ 0.29
VRK3Q8IV63 AF186996.4-201ENST00000467186 377 ntBASIC16.85■□□□□ 0.29
VRK3Q8IV63 SLC25A6P4-201ENST00000586535 553 ntBASIC16.85■□□□□ 0.29
VRK3Q8IV63 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
VRK3Q8IV63 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
VRK3Q8IV63 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VRK3Q8IV63 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VRK3Q8IV63 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.85■□□□□ 0.29
VRK3Q8IV63 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
VRK3Q8IV63 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.84■□□□□ 0.29
VRK3Q8IV63 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VRK3Q8IV63 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.84■□□□□ 0.29
VRK3Q8IV63 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VRK3Q8IV63 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VRK3Q8IV63 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VRK3Q8IV63 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VRK3Q8IV63 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VRK3Q8IV63 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VRK3Q8IV63 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VRK3Q8IV63 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.84■□□□□ 0.29
VRK3Q8IV63 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.84■□□□□ 0.29
VRK3Q8IV63 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.84■□□□□ 0.29
VRK3Q8IV63 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.84■□□□□ 0.29
VRK3Q8IV63 RNA5SP419-201ENST00000515908 135 ntBASIC16.84■□□□□ 0.29
VRK3Q8IV63 FAM215A-202ENST00000632077 792 ntBASIC16.84■□□□□ 0.29
VRK3Q8IV63 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VRK3Q8IV63 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms